RnoEX0101793 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62182850-62186426:+
Coord C1 exon
chr2:62182850-62183141
Coord A exon
chr2:62185691-62185887
Coord C2 exon
chr2:62186307-62186426
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGCTTTTCTAGGTG
3' ss Score
13.37
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAACCAACTGCCTCTCCTTCAAGTATTGGAGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTACTTCAGTGAAAGGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGGTACCTACCAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
Seq A exon
GTGGAAATAAGCTACAGTCAACAGGAAATAAAGCTGAAGACTTAAAAGGAACTGACTGCATTAAAAATAATCCTGCTGCCTCTGCTGTACAGATTCCAGAAGTAAAGCAAGATGCAGTGTCAGAACCAGTCACACCTGCATCCCTTGCTGCTTTGCAGAGTGATGTGCAACCAGTGGGACATGATTATGTTGAAGAG
Seq C2 exon
GTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627-'16-19,'16-16,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.894 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAAGTATTGGAGCAAGCA
R:
GCATTGGGGTCATTAAAGCTGC
Band lengths:
256-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]