HsaEX6097598 @ hg19
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32397325-32403502:-
Coord C1 exon
chr5:32403211-32403502
Coord A exon
chr5:32400112-32400308
Coord C2 exon
chr5:32397325-32397444
Length
197 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTGATACTTTTCTAGGTG
3' ss Score
10
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGTTAAGTTACACACAAAACTTGGTAAACCCATTCCATCAACAGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCGACTGCCTCTCCTTCAAGCATTGCAGCAAACAATTGTACTGTGAATACGTCATCAGTTGCAACGTCTTCAATGAAGGGTCTTACGACTACAGGAAACTCGTCTCTTAATAGCACATCTAACACTAAAGTATCAGCAGTGCCTACAAATATGGCTGCCAAGAAAACATCTACCCCCAAAATAAATTTTGTTG
Seq A exon
GTGGTAATAAGCTGCAGTCAACAGGAAATAAAGCAGAAGACATAAAAGGAACCGAATGTGTTAAAAGTACTCCTGTCACTTCTGCTGTGCAGATTCCTGAAGTAAAGCAAGACACAGTGTCAGAACCAGTCACACCTGCATCTCTTGCTGCTTTACAGAGTGATGTGCAGCCAGTGGGCCATGATTATGTGGAAGAG
Seq C2 exon
GTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATTGTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAGACTTCAATATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.848 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATCAGTTGCAACGTCT
R:
TGAAGTCTGTGTCTTCGCCCT
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)