HsaEX6091912 @ hg38
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr19:3822081-3825407:-
Coord C1 exon
chr19:3825230-3825407
Coord A exon
chr19:3823246-3823403
Coord C2 exon
chr19:3822081-3822200
Length
158 bp
Sequences
Splice sites
3' ss Seq
GACATGGTTTTTCCCCTCAGGGC
3' ss Score
10.16
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTTCAAGCTGCACGCCAAACTGGGGAAGCCCATTCCCACCCTCGAGCCTGCACTGGCCACAGAGAGCCCCCCCGGGGCAGAGGCCAAGCCCACGTCCCCCACTGGCCCCAGCGTGTGTGCCTCGAGCAGGCCAGCGCTGGCCAAGAGACCCGTGGCCTCGAAGGCCTTATGCGAGG
Seq A exon
GGCCTCCTGAGCCACAGGCAGCAGGCTGCAGACCCCAGTGGGGGAAACCAGCCCAACCTAAATTAGAGGGTCCCGGAGCACCTACCCAAGGAGGCTCAAAGGAAGCTCCCGCGGGCTGCTCTGATGCGCAGCCGGTGGGCCCGGAATATGTGGAGGAG
Seq C2 exon
GTGTTCAGCGACGAAGGGCGAGTGCTTCGCTTCCACTGCAAGCTGTGCGAGTGCAGTTTCAACGACCTTAACGCGAAGGACCTGCACGTGAGGGGGCGGCGGCACCGGCTGCAGTACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'22-31,'22-30,23-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.953 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGCTGCACGCCAAAC
R:
GTCCTTCGCGTTAAGGTCGTT
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains