HsaINT0185625 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3822079-3823401:-
Coord C1 exon
chr19:3823244-3823401
Coord A exon
chr19:3822199-3823243
Coord C2 exon
chr19:3822079-3822198
Length
1045 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCGGCTGTTCTGTGTCTCAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GGCCTCCTGAGCCACAGGCAGCAGGCTGCAGACCCCAGTGGGGGAAACCAGCCCAACCTAAATTAGAGGGTCCCGGAGCACCTACCCAAGGAGGCTCAAAGGAAGCTCCCGCGGGCTGCTCTGATGCGCAGCCGGTGGGCCCGGAATATGTGGAGGAG
Seq A exon
GTAAGTCGAGGCTGTCAAGTCCTGGTGCCCCGGTCAGGGAAGGACCTTCCCATGGATCAGGCTTCGAGACCTCACCCGGCTTCTCCCAGCGAGATTTACAGACCCATCCCCGTTCCTGAGCTGCACAGGCCAGACCTCCATGGACCAAAACCCCGTGCAGACCCGCTTGACACTTTGGGTGCCGGATTTTGGTATCAGCAGGAAATGAATATGGCCCCGTGAGGGCCAGAGACAGGCCGAGGCATTCCCAACAGGGGACCCTGCGGAGCCGTCTGTCTGGAAGGTGGAAGGGATCTGGGCAGTAGAAAGCTCCCCGGGAGGTTGGAAGCCCTTCTGTCTAGCCCCTTTCCTGGGCCTGCGGGACCCTGGGACCTGCCAAGGTCAGGCTGGTGAGCAGTGGAGCCGAGCTCCTGGGCCAGGTCTGCCAGCTCCCAGGCCAGCGGCAGTTCAGACCCCGGTTGGCCTTGTGCGTGCCAAAGAGGCAGGGCTGGGTTTCCTCTGCCTTGCCTGTAGGCCTGGGATTCTTTTAAGAGAAAGGGTCTTGCTGTGTCACCGAGGCTGGAGCACAGTGGTGCCATCATGGCTCACTGCAACCTCAAACTTCTGGGCTCAATCAATCCTCCCACCTCAGTCTCCTGAGTAGCTGGGACTACAGGCATGAGCCACCACTCCCAGCTAATTTTTGTATTTTTTATTTTTTTTGTAGAGATGGGGGTCTCGCTATGTTGACCAGGCTGGTCTTGAACTCTTGGGCTCAAGCAATCCTCCAGCCTCCCATGGTGGCGTGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCAAGACCGAGCCACTGTACTCCACTCCAGCTTGGGTGACACAGCAAGACGCTGTCTCTAAAAAGACATACATAAATAAAATGAGCAGCAAGGAGGAAGGCTCCGCCGCGACCTGGCAGCGGTAGCATCTCACATCCCACCCCGCCTCGTGCCTGGTGCGCGTGCGGCTGTTCTGTGTCTCAG
Seq C2 exon
GTGTTCAGCGACGAAGGGCGAGTGCTTCGCTTCCACTGCAAGCTGTGCGAGTGCAGTTTCAACGACCTTAACGCGAAGGACCTGCACGTGAGGGGGCGGCGGCACCGGCTGCAGTACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGCAGACCCCAGT
R:
CCTCACGTGCAGGTCCTTC
Band lengths:
230-1275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)