MmuINT0180117 @ mm9
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80706395-80707525:+
Coord C1 exon
chr10:80706395-80706540
Coord A exon
chr10:80706541-80707405
Coord C2 exon
chr10:80707406-80707525
Length
865 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACGTTCGTGTCCTGTCCTAGGTG
3' ss Score
10.05
Exon sequences
Seq C1 exon
GGCCACCTGAGCTGCAGACAATGCATGGCCGACCTGGAGACAGGCGGCCATCACACTTCAAGGTGGAGGCCACCAGGGGAGGCCCTGGGGAAGCTTCGGGGAGCTCTGGAGACATGGCGCCAGTGGGCACAGAGTATGTTGAGGAG
Seq A exon
GTAAGTGGCTGCTGGGACACTGAGTCTTGGTGAGCAGAGCTCAGCTTTGGCCCACTGTGGTTCTGTGAATGGAGCTGCCACAGTAGCCCATCCTCATGTCCACCTTCCACGCAAGGGGTGGGAAGCAGGACCAGGGGGTGGGAAAGCTCACTCAGGGCACCAAGGCCCTCCTGTCCCACCCTACTTGGCCTGAGGGCCCACTGTTCCAGTTTGGCACCAGAGAGCCAAGCTCTGTCTACCTCAGATGGCTTCATACCTTGGCCGGCTTTGCCTGGGAGAGTCAAACTGGACCTGCCTACCCTAAGTCCTGGTTTATGAATGCCAGCCCGAGGGTCCTTGGGCAGTACTTACTGTGCCTGCACCAGGGTGGCTGGCTGCTGCACAAACACCCAGGGTAGGGAGTCGCCACTCATAAGCTCTCTATTCACAGCTGGCTCCATGGCCACTGCCCCAGCAACACAGGGATGGTACTTCCATTGGTGTGTGCAGGTGACCCCTGTGTGGGTGTGTGCAGAAGATAGGTGGCGGTCCCCTAGCCATGTCTTTTTGTCCCTTGCACTTTGTCTAGGGCAGTGCTCACCAGCTAGAGCCAGCTGCGGTGGCCTGCTACTTGGTCATGGGGACAAAGAGAGTTCCTGGTAGCATACAAGGTGTCGGGTGGCTCTTTGCCCCTGGGGTGGGGTTGAGAGGCTGAAGGGACAGGTCAGGGGCATTCCCTGTGCTTTCAAAGCCACTTCTCTGGGATGACACACCCCTGCTAGTGCCATGGGGAGGCTCGTTGTCCTGGGTGTCTTGCTGTCCAGCACCCTCCAGGTCATCAGGGCTGGCCGGCAGGAAGCCGAGTCACGTTCGTGTCCTGTCCTAG
Seq C2 exon
GTGTGTAGTGATGAGGGGAAGGTGATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGACCGGAACGCCAGAGACATGCACCTGACTGGACGCCGGCACCGTCTGCAGTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-Zfr2:NM_001034895:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAATGCATGGCCGACC
R:
CGTCCAGTCAGGTGCATGTC
Band lengths:
230-1095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: