BtaINT0164454 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21389715-21390731:+
Coord C1 exon
chr7:21389715-21389875
Coord A exon
chr7:21389876-21390611
Coord C2 exon
chr7:21390612-21390731
Length
736 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AGCCAAGCCTTGTGTCTCAGGTG
3' ss Score
2.73
Exon sequences
Seq C1 exon
GGCCTCCTGCGCTGCCAGCAACTGACTGCAGAGCCCCCCACGGGAAACCAGCGACCCCCAGATCAGAGCGGCCCGGGGAGCCGTCCGCCCGAGGAGGCTCTACAGAAGCTTCTGGAAGCAGCTGTGAGGGGCAGCCAGTGGGCCCAGGCTACGTGGAGGAG
Seq A exon
GTAAGAGCTGGACGACCATCGCGTGCCTGGCTAGGCCTGGTGGTGCCATGCCTCGAGATTCGCACACATGCCTGGGCAAATAACCCCGCGAGCCAGCATCACTGGGACCTCACTGGGAGCCCTGGGTGTCAGGCTTCAGATCCCGGAAGGAGGTCTGAGACAGGCGGAGACGTTTCCTGCTCCCAGGCAGCACCAGTTCCTACAGGAAGGAAGGTGGCAGGAGGGATCTGTGCCCTGGAAACCCACAGGCATGTGACCCTTGGGCACTGGAGCCCACGTGCCCCCCCAGGCACCTGCCCGGACACCCGCTTCCTTGTGGAGCTTGGGTTCTGAGCCCTCTGCTCCCATGCCCACAGTCCCTGCCTCTAGGCACCTGCATGTTGGCACTTTTTCTGTGCTGGAGTTCAGGCTCTTGTTCAATCCACTCAGCGCTTCAGTTTTGTGCCCTGAAAAACAGCCACACCAGGCAGGCTTCCTGGTGGCAGCCCCAGGAAGGGGTGGGTGGGGGCAGGGAAGGAGGATGGGATGACGGTGGCAGAAGTGGTGGCAAGAAGGGCCAGGCTGGCAGGGTGCGCTGCTGAAGGTCACTCCTCTGAAAGCATTAACCACAGGGCAGACAGGAAGCCAGTGCCTGGCCTGGAAGGCCCTGGGGGAGGAGGCTCCTGTTAGAGCCCAGACCCACAGCGTGGGGGGTGTGGGGGCTGCAGGTGGTGCTCAGCCAAGCCTTGTGTCTCAG
Seq C2 exon
GTGTGCAACGAGGAGGGCCGGGTGATCCGCTTCCACTGCAAGCTGTGTGAGTGCAGCTTCAATGACCCCAACGCCAGGGACATGCACGTGCGGGGACGGCGGCACCGGCTGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGCAACTGACTGCAG
R:
CTTGTACTGCAGCCGGTG
Band lengths:
270-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]