RnoINT0168810 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62185691-62186426:+
Coord C1 exon
chr2:62185691-62185887
Coord A exon
chr2:62185888-62186306
Coord C2 exon
chr2:62186307-62186426
Length
419 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
TTCTATTTTTCCACACCAAGGTA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GTGGAAATAAGCTACAGTCAACAGGAAATAAAGCTGAAGACTTAAAAGGAACTGACTGCATTAAAAATAATCCTGCTGCCTCTGCTGTACAGATTCCAGAAGTAAAGCAAGATGCAGTGTCAGAACCAGTCACACCTGCATCCCTTGCTGCTTTGCAGAGTGATGTGCAACCAGTGGGACATGATTATGTTGAAGAG
Seq A exon
GTATTGATCTGAGTAATCATTACTCCAAAATAAGGCAAAAGGAAAAATGTCAAGCAGTATCCAGTTATACTTTGATTTCAGTTACCTATAAAATTAAGGTTGATTTTCTAATTTACACCATTCATTTGGTTCCTTGAGCTAACTAGGACATTAATAAAGAATTAATAGAAATGCTTCAAAAAGAAATCCAAATAGTTTCAGACAGATATTGAAGTAAACAATACTTTACAAAGGCAAGTATATGCTAGTATTCATTACAGTCCCAGTTTCTGTCTTTTTTTAAAAAATTAGGCTGGGGCAGTCAAGAAGCAGAGATAGGTAGAGCTCTGCAGTTGAAGGCCAGCCAAGGCTGCAGTACTGAGATAGTGTTCCAAAGACTGCTTCCAATTCGATCAGAGGTTCTATTTTTCCACACCAAG
Seq C2 exon
GTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATAAGCTACAGTCAACAGGA
R:
ACTGAAGTCTATGTCTTCGTCCT
Band lengths:
311-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]