GgaINT0063931 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NLI6]
Coordinates
chrZ:9627613-9628415:-
Coord C1 exon
chrZ:9628222-9628415
Coord A exon
chrZ:9627733-9628221
Coord C2 exon
chrZ:9627613-9627732
Length
489 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
GTTACAATCTTATTTTCCAGGTA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGGCAATAAGCTTCAGACAACAGGAAGTAAACTGGAAGAAATGAAATCAACTGAAAGTGTTAAAACAACTCCTACTGCCACGGTACAAACACAGGAAGTGAAACCAGACACTGCAGCTGAACCAGTGACTCCTACAACTCTTGCTGCCTTGCAAAGTGATGTCCAGCCAGTGGGACATGACTATGTGGAGGAG
Seq A exon
GTATTAATATGACAATTTGTGGTGTTTTTTTAGCTGTTTTGGTGAAAAATTGTTCAGAATGAAACAAAACATTGAACCTGAAAAGGCTTGTTTATGTGCTTACCTTAGTGTATTGTGTGCTTTTGTTTTGAGTTTAGTGAGACACTATTCATGTTGGTGGGGTGAAGTGTATAGGATCAGAATCTGATGTCAGTTTTTCGTATTTTGCAGATTTGCAATTACTGACTTCAACTCAGTATGTTCGTGTTCAGGTTTGAAGCTGCCTATTCTTTTGAATGGAAGAACTCTTTTCATATCTAAGCACAATGGTGTCTCTGACAGAACTGAAAGATCTAGTTTGTCTTATTTCAGTTAGTGTTTAGACAAACATTTTAACGTGTGTTGAAATCAGACAGTATCTAATATCACTGAATTAAATTCATTTTTGCATCAGTTTTGGGTTTAAAAATCAAAACCCACAGAAACACGTGTTACAATCTTATTTTCCAG
Seq C2 exon
GTAAGAAATGATGAAGGAAAGGTGATCCGCTTTCACTGCAAACTTTGTGAATGCAGTTTTAATGACCCTAATGCCAAGGAGATGCACTTAAAAGGAAGGCGGCACAGACTCCAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAATAAGCTTCAGACAACA
R:
ATATTGGAGTCTGTGCCGCCT
Band lengths:
311-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]