GgaINT0063931 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9119060-9119862:-
Coord C1 exon
chrZ:9119669-9119862
Coord A exon
chrZ:9119180-9119668
Coord C2 exon
chrZ:9119060-9119179
Length
489 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
GTTACAATCTTATTTTCCAGGTA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGGCAATAAGCTTCAGACAACAGGAAGTAAACTGGAAGAAATGAAATCAACTGAAAGTGTTAAAACAACTCCTACTGCCACGGTACAAACACAGGAAGTGAAACCAGACACTGCAGCTGAACCAGTGACTCCTACAACTCTTGCTGCCTTGCAAAGTGATGTCCAGCCAGTGGGACATGACTATGTGGAGGAG
Seq A exon
GTATTAATATGACAATTTGTGGTGTTTTTTTAGCTGTTTTGGTGAAAAATTGTTCAGAATGAAACAAAACATTGAACCTGAAAAGGCTTGTTTATGTGCTTACCTTAGTGTATTGTGTGCTTTTGTTTTGAGTTTAGTGAGACACTATTCATGTTGGTGGGGTGAAGTGTATAGGATCAGAATCTGATGTCAGTTTTTCGTATTTTGCAGATTTGCAATTACTGACTTCAACTCAGTATGTTCGTGTTCAGGTTTGAAGCTGCCTATTCTTTTGAATGGAAGAACTCTTTTCATATCTAAGCACAATGGTGTCTCTGACAGAACTGAAAGATCTAGTTTGTCTTATTTCAGTTAGTGTTTAGACAAACATTTTAACGTGTGTTGAAATCAGACAGTATCTAATATCACTGAATTAAATTCATTTTTGCATCAGTTTTGGGTTTAAAAATCAAAACCCACAGAAACACGTGTTACAATCTTATTTTCCAG
Seq C2 exon
GTAAGAAATGATGAAGGAAAGGTGATCCGCTTTCACTGCAAACTTTGTGAATGCAGTTTTAATGACCCTAATGCCAAGGAGATGCACTTAAAAGGAAGGCGGCACAGACTCCAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAATAAGCTTCAGACAACA
R:
ATATTGGAGTCTGTGCCGCCT
Band lengths:
311-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]