DreINT0177943 @ danRer10
Intron Retention
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40534210-40534615:-
Coord C1 exon
chr5:40534422-40534615
Coord A exon
chr5:40534330-40534421
Coord C2 exon
chr5:40534210-40534329
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
AATATGTTTTTGTTTTTCAGGTT
3' ss Score
11.21
Exon sequences
Seq C1 exon
GTGGAAACAAGTTACAAACCACTGCTTCTAAAAGTGACGAATCCAAAGCTGATGCAGCTAAAACTGCACAGTCTGCTGCGTCTGCACCAGCAGCAGATGCAAAGAATGACATGCCTGACCCCATGTCACCTCAGTCAGCACTTGCAGCCCTGCAGAGTGACGTTCAGCCTGTCGGACATGACTATGTTGAAGAG
Seq A exon
GTAACAGAAGCCACTATTAGGGATATAATTTCTGTAGTGATATCATTTTGAGTGGCCAAGTGGAAACAATGAAATATGTTTTTGTTTTTCAG
Seq C2 exon
GTTAGGAATGATGAAGGCAAGGTTATCCGGTTCCACTGCAAACTGTGTGAATGCAGTTTCAATGATCCCAATGCCAAGGAAATGCATTTGAAAGGAAGGAGACACCGACTGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109:ENSDART00000074789:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACATGCCTGACCCCATG
R:
TGCATTTCCTTGGCATTGGGA
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]