HsaINT0185607 @ hg19
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32397325-32400308:-
Coord C1 exon
chr5:32400112-32400308
Coord A exon
chr5:32397445-32400111
Coord C2 exon
chr5:32397325-32397444
Length
2667 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
AATTTTTTTTCCACACCAAGGTA
3' ss Score
4.49
Exon sequences
Seq C1 exon
GTGGTAATAAGCTGCAGTCAACAGGAAATAAAGCAGAAGACATAAAAGGAACCGAATGTGTTAAAAGTACTCCTGTCACTTCTGCTGTGCAGATTCCTGAAGTAAAGCAAGACACAGTGTCAGAACCAGTCACACCTGCATCTCTTGCTGCTTTACAGAGTGATGTGCAGCCAGTGGGCCATGATTATGTGGAAGAG
Seq A exon
GTAATTGATTTGAGAATACCATTGCTGTGAAATTGGATAAAGGGAAGAAGTGCATTACGAGCATATGTTACGTGTAAAATTAAATATACTTAATTGTATTTTAGATTTAGCTTACTTAAAGAATATTAAAGGAATCTTTGTTATAAGAAAGCATGTCCTTTAAGCCTGCCTAAGTGACATCATAATGATTTTTTTTTTGCTAACTTTTATATTATTTTCCCTGTGTATTGCCACTGTGGTGTGCAAAGTAACTTTCTATTTACTAGCAAGCATTCTTGTAATACATCCTTCAACTATCATAAAACTTTAAAAGTTCTGAGCAGCAAAAATGTTGATAAAGAGAACCAATATATTTATTTTTGAATAGTCAGTTTTGTGATAAAATTAAGTTTGCTGATTTAACAGAATATATTCATTTGGTTTCTCAAGTGGAGTAGAAGACTGTTGCTGTTTTACAGGTAAAGTAAACTCAGTAAAATAAAGGAGTGAAGGGATATCAGAGGGGACTGGATAAATACCTGCTGTTAGCAGAAAGACATACAGTGGCATATGACTACTATTTACTTTGACTTTAGAGCATATATGTTTTTTGAGCTTCAGTGTCGATATCTATAAAATTGGGATATTCCCTAACAAAGTTGTGAAGAGTAGATGAAATAAAGTACCTAGCATGGTGTCTAGCATCTAGGAGAGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTGAGACAGAGTCTTATTCTGCCACCCAGGCTGGAGTGTAGTGACACAGTCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCATGCCACCACCCCCAGCTGATTTTTGTATTTTTTTTAGTAGATGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCTGCCTGCCTCGGCCTTCCAAAGTGCTGTGATTACAGGCGTGAGACACTGCGCCTAGCCTAGTAGGTTTTAAATAAATATTTGTTCTTGCATCATTTTTCCTATCAAGAAAAATTATCTATGGATGGCCAGGCACAGTGGCTCACGCCTGTAATTGCAGCACTTTGGGAGGCCGAGGTGGGTGAATCACTTGAGGCCAGAAGTTCAAGGCCAGTAGTTGCGCACACTTGTAATCCCAGCTACTCGGGACGCTGAGGCACAATCACTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCACACAACTGTACTCCAGCCTGGGCAATAGAGTGAGACTCTGTCTCACAAAAAAGAAAAGAAAACAAGAAAAAGAAAAATTGTGTATTGAATTCTTTGTTTACAAGGTGGATAGCTGGGTTATGGAATTTATAATTAGTTCAGAAATAATTCTGACTTTTAAGTTTCATCTCTTAAAGGAGTAAGATTTGATTATCTCAAAAAAAGCTCTCAACCAGAACACCCAATTTTGATGATACTGTTTAATCCTAAACTTCAGAGAATTACATTCAGAACCTATCTTAAAGCTTGGACAATTTGAACTCAGTATTCATAATAGACTTCATAGTAAGACTCAAGTTTACTTGTCCTCCTATAACTGTTCAGTTAGAAAAAATTTCATCTTAATTTTCCATAAAGTTACATATTATAAAACCTTGAGCTTTGAGAAATTTTGTATACCAAAATAATGCTATTATTCGTCGTTATCTTCATTTTCAAGAACAATACTTGGCCAGCAGCAATTATTCAGTAACTATTAGAAAATTTAAGACATCTAGCTACATTTAAATCTAAATGCTTACATACATACAAAAATATTAAATTGAAAGATAGTGGCCAGGCATGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCCATCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATGGTGTGAACCCAGGAGGCGGAGCTGGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGAGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATACAAGAGCAAACACATGCTATCACATCTTGCATGCTAAAATTCCAACTTTTCATTCCCATTTCTACAGTTTCTATCCTTTTAAAAAGTAATAGGCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACAAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAACAAATTAGCCGGTCGTGGTGGTGTTACATACCTTTAATCCCAGCTACTTGGGTGGCTGAGGCGGGAGAATCGCTTGAACCCAGGAGGCTGAGGTTGTAGTGAGCTGAGTTCAAACCACTGCACTCCAGCATGGGCGACAGAGCAAGACTCTGTCCTGGGGAAAAAAAAAATGTAATAGACATTGCCACTTCTTTCTAACTGTGTACAACTTCATCAAATAATATGTGGGGGTTTATGAATGATATAATCTTCAACTATGATGATTCTTGAATTTTTTTTCCACACCAAG
Seq C2 exon
GTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATTGTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAGACTTCAATATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-ZFR:NM_016107:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)