HsaEX6091913 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3821338-3823401:-
Coord C1 exon
chr19:3823244-3823401
Coord A exon
chr19:3822079-3822198
Coord C2 exon
chr19:3821338-3821477
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCGGCTGTTCTGTGTCTCAGGTG
3' ss Score
8.75
5' ss Seq
CGGGTGCGT
5' ss Score
7.91
Exon sequences
Seq C1 exon
GGCCTCCTGAGCCACAGGCAGCAGGCTGCAGACCCCAGTGGGGGAAACCAGCCCAACCTAAATTAGAGGGTCCCGGAGCACCTACCCAAGGAGGCTCAAAGGAAGCTCCCGCGGGCTGCTCTGATGCGCAGCCGGTGGGCCCGGAATATGTGGAGGAG
Seq A exon
GTGTTCAGCGACGAAGGGCGAGTGCTTCGCTTCCACTGCAAGCTGTGCGAGTGCAGTTTCAACGACCTTAACGCGAAGGACCTGCACGTGAGGGGGCGGCGGCACCGGCTGCAGTACCGG
Seq C2 exon
AAGAAAGTGAACCCGGACCTTCCCATTGCCACGGAGCCCAGCAGCCGGGCTCGGAAGGTCCTGGAGGAGCGCATGAGGAAGCAGCGGCACCTGGCGGAGGAGCGGCTGGAGCAGCTGCGGCGCTGGCACGCGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'10-11,'10-10,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=0.300 C2=0.936
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=67.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAAATTAGAGGGTCCCGGA
R:
CTCCTCTCCGCGTGCCAG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)