GgaEX1000664 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NLI6]
Coordinates
chrZ:9626537-9628415:-
Coord C1 exon
chrZ:9628222-9628415
Coord A exon
chrZ:9627613-9627732
Coord C2 exon
chrZ:9626537-9626682
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTACAATCTTATTTTCCAGGTA
3' ss Score
9.81
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGCAATAAGCTTCAGACAACAGGAAGTAAACTGGAAGAAATGAAATCAACTGAAAGTGTTAAAACAACTCCTACTGCCACGGTACAAACACAGGAAGTGAAACCAGACACTGCAGCTGAACCAGTGACTCCTACAACTCTTGCTGCCTTGCAAAGTGATGTCCAGCCAGTGGGACATGACTATGTGGAGGAG
Seq A exon
GTAAGAAATGATGAAGGAAAGGTGATCCGCTTTCACTGCAAACTTTGTGAATGCAGTTTTAATGACCCTAATGCCAAGGAGATGCACTTAAAAGGAAGGCGGCACAGACTCCAATATAAG
Seq C2 exon
AAAAAAGTAAACCCAGATCTTCAAGTAGAAGTGAAGCCCAGCATTCGAGCAAGAAAAATTCAAGAAGAAAAGATGAGGAAGCAGATGCAGAAAGAAGAATACTGGAGAAGGCGGGAAGAGGAGGAACGCTGGAGGATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235-'15-17,'15-16,17-17
Average complexity
S
Mappability confidence:
100%=40=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.450 C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTACTGCCACGGTACAA
R:
CTCTTCCCGCCTTCTCCAGTA
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]