MmuEX0053751 @ mm9
Exon Skipping
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12082556-12086163:+
Coord C1 exon
chr15:12082556-12082752
Coord A exon
chr15:12084201-12084320
Coord C2 exon
chr15:12086018-12086163
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTTTCCACACCAAGGTA
3' ss Score
4.93
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGGAAATAAGCTACAGTCAACAGGAAATAAAACGGAAGACTTAAAAGGAATTGACTGTGTTAAGAATACTCCTGCTGCCTCTGCTGTGCAGATTCCAGAAGTAAAGCAAGATGCAGGGTCAGAACCAGTCACACCTGCGTCCCTTGCTGCTCTGCAGAGTGATGTACAACCAGTGGGACATGATTATGTTGAAGAG
Seq A exon
GTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAA
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTAGAAGTGAAGCCCAGTATTCGTGCCAGAAAAATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAGGAATATTGGCGGAGACGAGAAGAGGAGGAACGCTGGAGGATGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-'16-13,'16-12,18-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=0.375 C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACTCCTGCTGCCTCTGCT
R:
TTCCTCCTCTTCTCGTCTCCG
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: