RnoEX0101794 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62185691-62188608:+
Coord C1 exon
chr2:62185691-62185887
Coord A exon
chr2:62186307-62186426
Coord C2 exon
chr2:62188463-62188608
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTTTCCACACCAAGGTA
3' ss Score
4.93
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGGAAATAAGCTACAGTCAACAGGAAATAAAGCTGAAGACTTAAAAGGAACTGACTGCATTAAAAATAATCCTGCTGCCTCTGCTGTACAGATTCCAGAAGTAAAGCAAGATGCAGTGTCAGAACCAGTCACACCTGCATCCCTTGCTGCTTTGCAGAGTGATGTGCAACCAGTGGGACATGATTATGTTGAAGAG
Seq A exon
GTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAA
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTGGAAGTGAAGCCCAGTATTCGTGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAAGAGTACTGGCGGAGACGAGAAGAAGAGGAGCGCTGGAGGATGGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627-'19-22,'19-19,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.375 C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCCTGCTGCCTCTGCTGT
R:
GTCTCCGCCAGTACTCTTCCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]