DreEX6012580 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40533980-40534615:-
Coord C1 exon
chr5:40534422-40534615
Coord A exon
chr5:40534210-40534329
Coord C2 exon
chr5:40533980-40534125
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTTTGTTTTTCAGGTT
3' ss Score
11.21
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGGAAACAAGTTACAAACCACTGCTTCTAAAAGTGACGAATCCAAAGCTGATGCAGCTAAAACTGCACAGTCTGCTGCGTCTGCACCAGCAGCAGATGCAAAGAATGACATGCCTGACCCCATGTCACCTCAGTCAGCACTTGCAGCCCTGCAGAGTGACGTTCAGCCTGTCGGACATGACTATGTTGAAGAG
Seq A exon
GTTAGGAATGATGAAGGCAAGGTTATCCGGTTCCACTGCAAACTGTGTGAATGCAGTTTCAATGATCCCAATGCCAAGGAAATGCATTTGAAAGGAAGGAGACACCGACTGCAGTACAAG
Seq C2 exon
AAAAAGGTTAACCCAGATCTCCAGGTGGAAGTGAAACCAAGCATCCGTGCCAGGAAAATTCAAGAGGAAAAAATGAGGAAGCAGATGCAAAAGGAAGAATACTGGAGAAGACGCGAAGAAGAGGAGCGCTGGAGGATGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.475 C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTCTGCTGCGTCTGC
R:
GCTCCTCTTCTTCGCGTCTTC
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]