BtaEX6075786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41315106-41318323:+
Coord C1 exon
chr20:41315106-41315299
Coord A exon
chr20:41316974-41317093
Coord C2 exon
chr20:41318178-41318323
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCTGACATCAAGGTA
3' ss Score
4.71
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GTGGTAATAAGCTGCAGTCAACAGGAAATAAAACAGAAGACTTAAAAGGAACTGAATGTGTTAAAAACACCCCTGTCACTTCTGTACCAATTCCAGAAGTAAAGCCAGACACAGTGTCAGAACCAGTCACACCTGCGTCTCTTGCTGCTTTGCAGAGCGACGTGCAGCCAGTGGGCCATGATTATGTGGAGGAG
Seq A exon
GTACGAAATGATGAAGGAAAAGTGATTAGATTCCATTGCAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCATTTAAAAGGACGAAGACACAGACTTCAATATAAA
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTAGAAGTAAAGCCCAGTATTAGAGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAAGAGGAGTACTGGCGAAGAAGAGAAGAGGAAGAACGCTGGAGAATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.375 C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGTCACTTCTGTACCA
R:
TCCTCTTCTCTTCTTCGCCAGT
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]