HsaEX0072699 @ hg38
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr5:32395159-32400203:-
Coord C1 exon
chr5:32400007-32400203
Coord A exon
chr5:32397219-32397338
Coord C2 exon
chr5:32395159-32395304
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTCCACACCAAGGTA
3' ss Score
4.49
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGGTAATAAGCTGCAGTCAACAGGAAATAAAGCAGAAGACATAAAAGGAACCGAATGTGTTAAAAGTACTCCTGTCACTTCTGCTGTGCAGATTCCTGAAGTAAAGCAAGACACAGTGTCAGAACCAGTCACACCTGCATCTCTTGCTGCTTTACAGAGTGATGTGCAGCCAGTGGGCCATGATTATGTGGAAGAG
Seq A exon
GTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATTGTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAGACTTCAATATAAA
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTAGAAGTAAAGCCTAGTATTCGAGCAAGAAAGATTCAAGAAGAGAAAATGAGGAAGCAAATGCAGAAGGAGGAGTACTGGCGAAGACGAGAAGAAGAGGAGCGTTGGAGAATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.375 C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTCACTTCTGCTGTGC
R:
TCGTCTTCGCCAGTACTCCTC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development