DreEX0086441 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4689295-4691377:-
Coord C1 exon
chr22:4691229-4691377
Coord A exon
chr22:4690910-4691029
Coord C2 exon
chr22:4689295-4689440
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGACGATTCTCTCTCTTCAGGTT
3' ss Score
11.31
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TCAGTAAACCGTCCACATCGACTGTGGTGAAAATGGAGGAGGTGAAGCCGCCTGTGGTCAAAACAGACCCTTCCAGCGATGATGAGGATGCAGACGCTACAGGACCTCAAGGAGACATCCAGCCTGTGGGACACGATTATGTCGAAGAG
Seq A exon
GTTCGTAATGATGATGGAAAGGTGATTCGCTTTCATTGTAAACTGTGTGAATGCAGCTTCAACGATCCCAACGCTAAAGACATGCATCTGAAGGGACGCAGACACAGACTGCAATACAAA
Seq C2 exon
AAAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCGAGCAATCGTGCACGGAAACTTCTGGAGGTCAAGCTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAGGAGGACGAGCAGCGCTGGCACATGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-'16-11,'16-10,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.481 C2=0.888
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=61.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGGAGGAGGTGAAGCCG
R:
TCGTCCTCCTGCTGTCTCTTC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]