RnoEX0101811 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11341318-11343187:-
Coord C1 exon
chr7:11343042-11343187
Coord A exon
chr7:11342064-11342183
Coord C2 exon
chr7:11341318-11341457
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGAGCTGTGTTCTGTTCCAGGTG
3' ss Score
11.33
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
GGTCACCTGAGCTACAGACAGTGCACAGCTGGCCTGGAGACAGGCGGCCATCACACTGCAAGGCAGAGGCCACCAGGGGAGGCTCCGGGGAAGCTTCGGGGATCTCGGGAGACACGGAGCCAGTAGGCACAGAGTACGTCGAGCAG
Seq A exon
GTGTGCAGCGAGGAGGGGAAGGTGATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGATAGGAATGCCAGAGACATGCACCTGACGGGACGCCGGCACCGGCTGCAGTACAGG
Seq C2 exon
AAGAAAGTTGACCCTACACTTCCAGTGGCCACCCGGCCCAGTGGCCCCATGCAGAGGGTGCTGGCCAAGCGGCTGCAGAGGCAGCGGCAGCAGACACAGGCACGGCTGGAGGATGCACAGCGCTGGAACTCTGAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416-'12-12,'12-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.425 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGACAGTGCACAGCTGG
R:
CAGCCGTGCCTGTGTCTG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]