BtaEX6039078 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21389715-21392042:+
Coord C1 exon
chr7:21389715-21389875
Coord A exon
chr7:21390612-21390731
Coord C2 exon
chr7:21391903-21392042
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGCCAAGCCTTGTGTCTCAGGTG
3' ss Score
2.73
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
GGCCTCCTGCGCTGCCAGCAACTGACTGCAGAGCCCCCCACGGGAAACCAGCGACCCCCAGATCAGAGCGGCCCGGGGAGCCGTCCGCCCGAGGAGGCTCTACAGAAGCTTCTGGAAGCAGCTGTGAGGGGCAGCCAGTGGGCCCAGGCTACGTGGAGGAG
Seq A exon
GTGTGCAACGAGGAGGGCCGGGTGATCCGCTTCCACTGCAAGCTGTGTGAGTGCAGCTTCAATGACCCCAACGCCAGGGACATGCACGTGCGGGGACGGCGGCACCGGCTGCAGTACAAG
Seq C2 exon
AAAAAAGTGAACCCCGACCTCCCGATCGCAGACAAGCCCAGCACACGGGTGCGCAAGCTCGTGGAGGAGACACTGCGGAGGCAGCGGCAGCTGACCAAGAGGCGGCTGGGGGAGCTGCGGCGTTGGCACAATGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.375 C2=0.851
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGACCCCCAGATCAGAG
R:
CTTGTCTCATTGTGCCAACGC
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]