MmuEX0053762 @ mm9
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80706395-80708289:+
Coord C1 exon
chr10:80706395-80706540
Coord A exon
chr10:80707406-80707525
Coord C2 exon
chr10:80708150-80708289
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACGTTCGTGTCCTGTCCTAGGTG
3' ss Score
10.05
5' ss Seq
AGAGTGTGT
5' ss Score
1.04
Exon sequences
Seq C1 exon
GGCCACCTGAGCTGCAGACAATGCATGGCCGACCTGGAGACAGGCGGCCATCACACTTCAAGGTGGAGGCCACCAGGGGAGGCCCTGGGGAAGCTTCGGGGAGCTCTGGAGACATGGCGCCAGTGGGCACAGAGTATGTTGAGGAG
Seq A exon
GTGTGTAGTGATGAGGGGAAGGTGATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGACCGGAACGCCAGAGACATGCACCTGACTGGACGCCGGCACCGTCTGCAGTACAGA
Seq C2 exon
AAGAAAGTGGATCCTACACTTCCAGTAGCTGCCCGGCCCAGCGGCCCCATTCAGAGGGTGCTGGCCAAGAGGCTACAGAGGCACTGGCAGCAGGTACAGACACAGCTGGAGGATACACGGCGCTGGGACTCTGAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.425 C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=WD(100=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGCATGGCCGACCTG
R:
TCCTCCAGCTGTGTCTGTACC
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: