HsaINT0185626 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3821338-3822198:-
Coord C1 exon
chr19:3822079-3822198
Coord A exon
chr19:3821478-3822078
Coord C2 exon
chr19:3821338-3821477
Length
601 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGT
5' ss Score
7.91
3' ss Seq
GCCTTGCCTGTCCTTTCCAGAAG
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTGTTCAGCGACGAAGGGCGAGTGCTTCGCTTCCACTGCAAGCTGTGCGAGTGCAGTTTCAACGACCTTAACGCGAAGGACCTGCACGTGAGGGGGCGGCGGCACCGGCTGCAGTACCGG
Seq A exon
GTGCGTCCAGCAGGGGGAGCTCCGACACCCGTCCGGGCTGTGCTAGGGCCCGGCGGGCGCTGGGAGGCCTGTGGTCGGGCCTCTTCCGCGCGTGTGATCCGACGAACTTAAGAGGGAGGGGTGATTTTCTGGGTTTTCAACGTCTTGGTCCTCGTCTCAAAAGTGTATCTTCGGCCGGGCGCGGTGTCTCACGTCTATCATCCCAGCACTTTGGGAGGCCAAGTTGGGTGGATCATTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAATCTTTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGGTCACACCATTGCACTCCAGCCTGGGAGACAAGAGCAAGACTCTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAAAGGCTTTGGGAGATTTTTCAGCCCAACAGTTCTAGTCTCTGGGCCTCTCCCTGCACCCCAAGATCCTCCTGGCATCCCTGTCTAAAGCAAGGTCCCTACTCTCAGAGCCTTGCCTGTCCTTTCCAG
Seq C2 exon
AAGAAAGTGAACCCGGACCTTCCCATTGCCACGGAGCCCAGCAGCCGGGCTCGGAAGGTCCTGGAGGAGCGCATGAGGAAGCAGCGGCACCTGGCGGAGGAGCGGCTGGAGCAGCTGCGGCGCTGGCACGCGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.936
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=WD(100=67.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAGCGACGAAGGGC
R:
CTCCTCTCCGCGTGCCAG
Band lengths:
260-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)