GgaINT0110827 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:165964367-165965613:-
Coord C1 exon
chr1:165965494-165965613
Coord A exon
chr1:165964513-165965493
Coord C2 exon
chr1:165964367-165964512
Length
981 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TTTATTTTTTTCTGAACTAGAAA
3' ss Score
7.44
Exon sequences
Seq C1 exon
GTAAGAAATGATGAAGGAAAGGTGATCCGCTTTCACTGTAAACTTTGTGAATGCAGTTTTAATGATCCTAATGCCAAGGAGATGCACTTAAAAGGGAGGCGACACAGACTTCAGTATAAG
Seq A exon
GTTAGAAGAAATGCTTATGCTTCTATCTGAAAATCCACCAGGTGTCAGCTGACTAATTGCATGGTCTTACATTTGAAGAATAGCCAATGCAAGTGCTATGATTAAACATTACATAAAAAAGATAAAGAAATACATTCACCTTATAGTTTATTTTCTTCAGAGTATAGCTTTTAAAGAAATCATGTAGACTGTGAAAATGCATTTTGATATTTTTTTTAAATAATATTTTGAACATTGCTTTTGGGAACATTTGTAACATTAAAATATGGTACGACATGCAAGCAACAGTAGGTTCTCTTATGTTGATTACTATTCATTTCAAATGGTGTAAAAGAGTAGTGCTTAATGTTTTTGGCAGAGTAGACCACATAAACCCTTCGTGGAGACATTTGAGAAACAAGTGTTGAATATTTTTTCAGTCGTGAATGGAGAGAGACCTGTACTGGCATATAGTCTGCATTTTGATTATTACAAAATTATGTAGGAAGAATGTACTGTGATCACAGGAAATGTAATGGATCTGCATAATTATGAAAGGGATGAAAGGAAATATTTAATAGAAAAAATGTATTCAGTAATTCATAATTATGTGTCTGTAAGAGGTATCCTTCAGGAATGGTATCAGGAAGCATGCAGTAGTGGAGAGGAAATGTTTCTTTTTTTCAGGCTACAGAGTAGTCATCCAGCTACAGAATGAACAGCAAATTACTTGCTGTTACATGAAGTATTTTCATTTTAAATTGCTTTAATCCTGATGCAGGTGAAGAGGGAATTCATGCTGTTTGTAATATGTTGTTATTTCTTTAAAATAGTGGACACGTTTCTTCAACTATTCATTCAATATAGTTCTAAAACTGCATTTTATTCCCCTTGATTTTATTGTAGACAAGCAGCGTGTGTTAAAGATTCTAGAAAAACAGTAACATTGAGATGACAAGAGAAAAACCAACATTTCATTCTTTTTATTTTTTTCTGAACTAG
Seq C2 exon
AAAAAAGTAAACCCAGATCTACAAGTAGAAGTAAAGCCCAGTATTCGAGCAAGAAAAATTCAAGAAGAAAAGATGAGGAAACAGATGCAGAAAGAAGAATACTGGAGAAGGAGAGAAGAGGAAGAACGCTGGAGGATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGATGAAGGAAAGGTGATCCG
R:
CTCATTTCCATCCTCCAGCGT
Band lengths:
262-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]