RnoINT0168793 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62186307-62188608:+
Coord C1 exon
chr2:62186307-62186426
Coord A exon
chr2:62186427-62188462
Coord C2 exon
chr2:62188463-62188608
Length
2036 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGTATTATCGGTGTTAACAGAAA
3' ss Score
5.31
Exon sequences
Seq C1 exon
GTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAA
Seq A exon
GTAAGTATATGCTAACTATTGAACTATTGTTCTTTTTAAGTTTTTTGACATACATTTTTATTTTATGAATACGGATGTTCTTTGTGCATGTAATATCTGTGCTTCTAATGTGTTTGCCTATTGCCCAGAGAGGCCAGAAGAAAGCATTAGATTCCCTGGAACTAGAGTTACAGACTAGAACCAGTTACAGTGCTGGGAATCAAATCAAGGTCTTCTGGAAGAACAGCCAGTGCCTCTTGGCCTCTGAACCACCTGTCTCTGCAGCTCTTGAGTTATCCTTTTGTAACAAATAGCACATTCTCTGCATCTAAACACAGTTCACCTGGTGTATGAGCCCCTGTTCTAAATTTGCATGTTGTATTGATACATTTACTTTGATAGGATGATAGTATGACTCTAGTTGGAGTGTAACTGGCAAAAGTGGAATATAGCAAAACTAATACATTGCTTGGTTCAAGAAATCATATAATGATAGTTGATTCCTGTTAAATGTAAAAACTATCACTTCACCTGCCTCTCTCCCTCTTTGGTTTTCTGAGGCAGGATTTTNNNNNNNNTNNNNNNNNNNNNNNGAACTCACTCTGTAGACCAGGCTGTCATAGAACTCGAGAACCTGCTTCTGCTTCCCAAGTGCTGGACTTAAAGGTGTGCGCAGCCAGCACCTGGCTTTCACCTGTCTCCTTTATGGTGGTACATTCTCAGTGAGGTTAATTTGGAGCTAGTGCTGGGAGGTCTCTTCATCTATTTACACTAGGAGTGCATCATTGCCTACTCAGGTATTGACATGTCAAAGTTGCTAAAGTATGGACTGGTAGAGTGGGTGTGGGTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAACTGGGGACCGAACCCAGGGTGGGTTTTCTTTTAAACACAGGGTATGGTTATGTCACTCATGTAACTGGGATCACCGTCTCTGGCTCCAGCTGCATGACCTAATAAACCCTTTAAGACATACACTTATAACCATCTATTTATTAATAAGCAAAATGAAAAGTCCTCCAAGGATTTCATGGTTTCCTGTTAGGTCAGCACTAAGTTACATAGTTTTTTAAATATGTTCTTGAGCATGAATAATTAAGCCTATAACAAATATTTTCTCGGGCTGGAGAGATGGCTCAGCAGTTAAGACTGCTCTTCCAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAAAGAAAAAAGGAAAAAAAAAAAAAAAGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAACAACCACATGATGACTTACTACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTATTTATATATAATAAATAAATCTTTTTTTAAAAATTAAAAAAATATTTTCTCAGATTTAATCTAATTATACAGTTTGTACTCTTCAGTAGGGAATTTTAACAAGTTCAAGGCCAGGTTCACACACGCACACACCAACTGAGTATATATTCAGTCTGTAGGCTACTAAGCAAGCTGTCATGCTCAGGCCCTGGGTTGCATCCTAGCACTGCAAATACTGGGTATGATAGACAGGTGTCTATAATCTCATCATTTCACTTTGGGTAGAGGCAGACAGAACAGTTTAAGGTCATCACCATTTACAGATCTATTTTGAAGTCAGCCTAGATTACATGAGACCCTGTCTCACAAATAAAAACAAGAAACCAATACATATCTACAACACGAAATTTGTAATTCTAAGCTTCTGATGAGAGACTGTAAAACTGTGATTGAGATGTTGTGGGGCAGGTAAAGGCACTTGGTGCCTCTCTGATAACCTGAAAGTCATCCCTGAGACCCACATGGTGGAAGGAGAAACTTAGCCAAGTTATCCTCTGATCTCTCCAGACATGCACAGATGATAAATTCAAAAATAAATTACTTTTAATGAATTGTTTGTTGAAGACGCCTGCTCCTTTTTAAAAATGTATTATCGGTGTTAACAG
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTGGAAGTGAAGCCCAGTATTCGTGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAAGAGTACTGGCGGAGACGAGAAGAAGAGGAGCGCTGGAGGATGGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]