HsaINT0185590 @ hg38
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr5:32395159-32397338:-
Coord C1 exon
chr5:32397219-32397338
Coord A exon
chr5:32395305-32397218
Coord C2 exon
chr5:32395159-32395304
Length
1914 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTCTTATTTATATTAATAGAAA
3' ss Score
5.9
Exon sequences
Seq C1 exon
GTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATTGTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAGACTTCAATATAAA
Seq A exon
GTGAGTAAAATTTCAGCTATTACCTTCTTTAAAACAAAAAACAAAAACAAAAACACCCAGAGCATTCTTTATGTAAAAGAAAGCATCTAAACACAGCTTGCCAAGTCCATGATGTCCCATTCTAAGATTAGCATGTCATGTTGGTAGACTCAGATGGATGTTTGGTTTTTATTTATCCATTTTTAAAATAAAGAAGAATAACATTCTCATCAGTTTTAGTAATTGTGGCAAAAACTGAAGCATTGCCTGGACCAAGCAATCATGTAAAGATAATTAATTCACATAAAATGTTTGAAAAAAGTCTCAACTATTTATCCACCTTCTTTATCTGGTAGAATTCCCACCAAAATGAACTTTGAGATGAGTTGATATGTTGGAAAATCCCTTCACTTATCTTAGCGTAGGAATTCTTCACTGAATACACTTCAAATGTTAAGATAAATCAGATATTGTATTTGAAGTTTTTTTTTTTAATGAGATGGAGTCTCGCTCTGTAGCCAAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAGCCTCTGCTTCCTGGGTCCCTGTTCAGGCATTTCTCCTGTCTCCGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCCCCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGTTGGCCTGAACTCCTGACCTCATGATCCGCCCTCCTTGGCCTCCCAAAGTGCTGGGATTACATGCGTGAGCCACCGTGCCTGGCCTGTATTTGAAGTTTTTAACTAGGCTAGATTGATGTACTAGATCCATGTTTTCTGTTTTAAACACGGAGGAGGTGAAAATTAAAACAGTGTAAAAGGGTAGTACTTAAATATGTAAAGAAACTTTTTAACCCCAACATAGACATTTAGAGTCATCTGTTTATAAACAGTTACAGTTGACCCTTGAACAACATGGAGGTCAGGGGCCCCTCACGCAGTCAAAAATTTGCCTGCCTTTTTTTTTTTTTTGAGATAGGGCCTTGCTCTGTTGCCCAGGCTGGAGTACGATGACATGAACATGGCTCACTGCAACCTCCCGGGCTCCAGTGATCCTCCCACCGCAGCCTCCCAAGTAACTGGGACTACAGGCATGTGCCACCATGCCTGGCTAGCTTTTGTATTTTTCTAGAGAACGTTTCACCATGTTGGCCGGGCTAGTCTGAAACTCCTGGCCTCAAGTGATCTGCCTTCCTTGGCCTCCCAAAGTGCTGGGACTCCAGGCTGCTTATAACTTTTGACTCCCTAAAAACTTCTAAAAGCCTACTAATGACCAGAAGCCTTACTGATAACATAAACAGTTATTTTTATGTTAACACATTTTTGGTATGTCATGTATCTCATATATACTGTATTCTTAGAATAAAGTAAGCTAGAGAAGAGAAAATATTATTGAGAAAATATGAAAATCAAAATATTTACTATTCATTAAGTGGAAGTGGGTCATCATATAAAGGTCTTCATCCTCATCATCTTCAAGTTGAGTAGGCTGAGGAAGAAGAGGAGGGGTTGGTCTTACTCTCTCAGGGGTGGCAGAGGGAGAAGAAACTCAGCAGCATAGATGTAAGTGTATTCATATACTTCAAACCCCTGTTGTTCAAGGGTCAAATGTAAAGTAAAATTAAATATCCATTAGTTTTTCTAAGGATTTCATGACTTTTTGTTGGTCAGCACTAAGTTACATACTTTTTACATAATTTTTATTAATGTATTTTGAATCTTTTCTCTGATTTACCTTAATTATATTGATTTTACTCTCTAGTGGGAAACTTGCAACTAAAAGCCTCCGTGATTAAAGAATAAGTGTAATTGTATGATTAAAAATACATGTAGATTGTTTTGGGGCTGCTGTTTTTTAAATGTCTTATTTATATTAATAG
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTAGAAGTAAAGCCTAGTATTCGAGCAAGAAAGATTCAAGAAGAGAAAATGAGGAAGCAAATGCAGAAGGAGGAGTACTGGCGAAGACGAGAAGAAGAGGAGCGTTGGAGAATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097:ENST00000265069:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATGATGAAGGAAAAGTAATTCG
R:
TCATTTCCATTCTCCAACGCTCC
Band lengths:
262-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains