HsaINT0185590 @ hg19
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32395265-32397444:-
Coord C1 exon
chr5:32397325-32397444
Coord A exon
chr5:32395411-32397324
Coord C2 exon
chr5:32395265-32395410
Length
1914 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTCTTATTTATATTAATAGAAA
3' ss Score
5.9
Exon sequences
Seq C1 exon
GTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATTGTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAGACTTCAATATAAA
Seq A exon
GTGAGTAAAATTTCAGCTATTACCTTCTTTAAAACAAAAAACAAAAACAAAAACACCCAGAGCATTCTTTATGTAAAAGAAAGCATCTAAACACAGCTTGCCAAGTCCATGATGTCCCATTCTAAGATTAGCATGTCATGTTGGTAGACTCAGATGGATGTTTGGTTTTTATTTATCCATTTTTAAAATAAAGAAGAATAACATTCTCATCAGTTTTAGTAATTGTGGCAAAAACTGAAGCATTGCCTGGACCAAGCAATCATGTAAAGATAATTAATTCACATAAAATGTTTGAAAAAAGTCTCAACTATTTATCCACCTTCTTTATCTGGTAGAATTCCCACCAAAATGAACTTTGAGATGAGTTGATATGTTGGAAAATCCCTTCACTTATCTTAGCGTAGGAATTCTTCACTGAATACACTTCAAATGTTAAGATAAATCAGATATTGTATTTGAAGTTTTTTTTTTTAATGAGATGGAGTCTCGCTCTGTAGCCAAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAGCCTCTGCTTCCTGGGTCCCTGTTCAGGCATTTCTCCTGTCTCCGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCCCCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGTTGGCCTGAACTCCTGACCTCATGATCCGCCCTCCTTGGCCTCCCAAAGTGCTGGGATTACATGCGTGAGCCACCGTGCCTGGCCTGTATTTGAAGTTTTTAACTAGGCTAGATTGATGTACTAGATCCATGTTTTCTGTTTTAAACACGGAGGAGGTGAAAATTAAAACAGTGTAAAAGGGTAGTACTTAAATATGTAAAGAAACTTTTTAACCCCAACATAGACATTTAGAGTCATCTGTTTATAAACAGTTACAGTTGACCCTTGAACAACATGGAGGTCAGGGGCCCCTCACGCAGTCAAAAATTTGCCTGCCTTTTTTTTTTTTTTGAGATAGGGCCTTGCTCTGTTGCCCAGGCTGGAGTACGATGACATGAACATGGCTCACTGCAACCTCCCGGGCTCCAGTGATCCTCCCACCGCAGCCTCCCAAGTAACTGGGACTACAGGCATGTGCCACCATGCCTGGCTAGCTTTTGTATTTTTCTAGAGAACGTTTCACCATGTTGGCCGGGCTAGTCTGAAACTCCTGGCCTCAAGTGATCTGCCTTCCTTGGCCTCCCAAAGTGCTGGGACTCCAGGCTGCTTATAACTTTTGACTCCCTAAAAACTTCTAAAAGCCTACTAATGACCAGAAGCCTTACTGATAACATAAACAGTTATTTTTATGTTAACACATTTTTGGTATGTCATGTATCTCATATATACTGTATTCTTAGAATAAAGTAAGCTAGAGAAGAGAAAATATTATTGAGAAAATATGAAAATCAAAATATTTACTATTCATTAAGTGGAAGTGGGTCATCATATAAAGGTCTTCATCCTCATCATCTTCAAGTTGAGTAGGCTGAGGAAGAAGAGGAGGGGTTGGTCTTACTCTCTCAGGGGTGGCAGAGGGAGAAGAAACTCAGCAGCATAGATGTAAGTGTATTCATATACTTCAAACCCCTGTTGTTCAAGGGTCAAATGTAAAGTAAAATTAAATATCCATTAGTTTTTCTAAGGATTTCATGACTTTTTGTTGGTCAGCACTAAGTTACATACTTTTTACATAATTTTTATTAATGTATTTTGAATCTTTTCTCTGATTTACCTTAATTATATTGATTTTACTCTCTAGTGGGAAACTTGCAACTAAAAGCCTCCGTGATTAAAGAATAAGTGTAATTGTATGATTAAAAATACATGTAGATTGTTTTGGGGCTGCTGTTTTTTAAATGTCTTATTTATATTAATAG
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTAGAAGTAAAGCCTAGTATTCGAGCAAGAAAGATTCAAGAAGAGAAAATGAGGAAGCAAATGCAGAAGGAGGAGTACTGGCGAAGACGAGAAGAAGAGGAGCGTTGGAGAATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-ZFR:NM_016107:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATGATGAAGGAAAAGTAATTCG
R:
TCATTTCCATTCTCCAACGCTCC
Band lengths:
262-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)