GgaINT0063932 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9117984-9119179:-
Coord C1 exon
chrZ:9119060-9119179
Coord A exon
chrZ:9118130-9119059
Coord C2 exon
chrZ:9117984-9118129
Length
930 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTTTTTTTTTTTTAACTAGAAA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTAAGAAATGATGAAGGAAAGGTGATCCGCTTTCACTGCAAACTTTGTGAATGCAGTTTTAATGACCCTAATGCCAAGGAGATGCACTTAAAAGGAAGGCGGCACAGACTCCAATATAAG
Seq A exon
GTCAGTAGAAATGTTTACGCTTCTGTCTGAGAATCTACCAGATGTCAGCGGACTAATTGCATGGTTTTACAGTAAGGATTACCAAATTAAGTGTTCTGAGCACATGAAAAGGTAGAGAAATACATTCACCTTCTAGTTGATTTTCTTTATAGTTTTTAAATAAGTTAAGCAGACTGAAAATGCATTTTTATTTTTTATTTTTATTTTTTAACATTTTGAATGCAATATTTGGGGACATTTGCAATGTTAAAATACGGTACAACAGCAAGCAACATTAGGGTTCTATGTTGTTTACCATTAATTTCAAACACTGTGTGAATAGTTTTGTCAGGGTAGACTACGTAAACCTTTTGCAGAGACATGAGAAACAAATGTAGGCCATTTTTTTCAGTCATGAATGGAGAGAGACTGATGTACAATATGCATTTTGGTTATTATAAAATTACATAAGAAGAATCTGCCGTGGTTACTGGAGAGGTAATGGGCCTGCATAATCTTGAAAAGGATGAAAGATAATTACTAGAAAGATGTTTTCAGTAATTCATGAATATGTTCTTTCAGGAACAGGGTATCAGAAAGCACATAGTAGGAAGGAGGATTTTTATTTTTTTTTTCTGGCTACAGAGTAGTCATCCAGCTACAGAATGAACAGTAAATTATTAGGTATTACATGAAACATTTTAATCTTAAATTGCTTGGTTCTTGAAGCAAGTGAAGAAGGAATTCATGCTGTTTGTAATACATCATTTCTTCAAAGTAGTGGAAACATATTTCTCTTGAACTACTCAGTGTAGTTCTAGAACTGTATTTTATTCCTCTTGATGTTATTGTGCACAAGTAGTGTGTGTTAAACATTCCAGAAAAACTGTTTTAGCAATGAAATGATGAGAGAAAAACCAACATTTCCTTTTTTTTTTTTTTTTTAACTAG
Seq C2 exon
AAAAAAGTAAACCCAGATCTTCAAGTAGAAGTGAAGCCCAGCATTCGAGCAAGAAAAATTCAAGAAGAAAAGATGAGGAAGCAGATGCAGAAAGAAGAATACTGGAGAAGGCGGGAAGAGGAGGAACGCTGGAGGATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.653
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGATGAAGGAAAGGTGATCCG
R:
CTCATTTCCATCCTCCAGCGT
Band lengths:
262-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]