BtaINT0164436 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41316974-41318323:+
Coord C1 exon
chr20:41316974-41317093
Coord A exon
chr20:41317094-41318177
Coord C2 exon
chr20:41318178-41318323
Length
1084 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
3' ss Seq
CATCTTATCTATGTTAACAGAAA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTACGAAATGATGAAGGAAAAGTGATTAGATTCCATTGCAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCATTTAAAAGGACGAAGACACAGACTTCAATATAAA
Seq A exon
GTGAGGAAAATTTCAGCTATTTTTCTCTTTCTCTTTTTATATAGCTTGGAACATTCTAGATGCAAAAATAAAGCATCTAAATATAACTCCTTAAGTCCATGAACTCCCACTCTAAGATTGGCATGTCATGTCTCACTTAGAGAGTCAGATGTTTAGTTTTTATTGATTAGTTATACTTACGGCTTTCCCTGGTGCCTCAGATGGTAAAGAATCTGCCTACAATGCAGGAGACCCAAGTCCGATCCCTGGGTCTGAAAGATTTCCTGGAGAAGGGCATGGCAGCCTACTCCATTGTTCTTGCCAAAGAATTCCATGGGCAGAGGAGCCTTATGGGCTACAGTCCTTGGGGTCACAGAATTGGACACAACTGAGTACCTATCACTTTTGTTATACTTAAGAAGAAGCAGTGTAGTCGTTTTTCATTATTTCTAGTGGCAAAATAAAACTGACATTACTTGGATCAAGTAATCATGTAAAAATAGTTGCTTCAAAGGAAGTGTTTGAAAGAAATGTCAGGTCTCCAATTTCCTTTATCTTGGCAGAATTTGCATTAAAGTGAATTTTGAGATGAGGAATTCTTCATTGAAAACACTTCCAAGTAATAAGTTAAATCTAAATACTGTATTTAAAGTTTTTAATTAGATTGGACTTATGCACTAGATTCATGTTTTCTAAACACAGAAGTGGTGGAGATTAAAAATAATTTGTTAAGGGGCAGTAATACTTCTATATGAAAAAAAGTTTTTAACCCCACACTCAGATATCTAGAAACATTTATTTACAAACAAACAAAGGAATACTAAATACCCATCAGTCTCCTAAGGATTTCTTTTATTGGTTAACACTTAATTAAGTACTTTTTGCATACTAGAAGAACGAAGAATTTTGGGGATGGGAAGGAAGAAAGAATGTTTATGAATGTATTTTGAGTTTTTCTCTGATTCAACTTATTTTACTACATTTACTCTTATAATTTGCAAATAAAAGCCTCTGATGAAAGAATATATGGGATTGTATGATTTAAGATATGTGTAGATTGTTGGAAGGATTGCTGGTTTTTCAGACATCTTATCTATGTTAACAG
Seq C2 exon
AAAAAAGTAAATCCAGATTTGCAAGTAGAAGTAAAGCCCAGTATTAGAGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAAGAGGAGTACTGGCGAAGAAGAGAAGAGGAAGAACGCTGGAGAATGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414:ENSBTAT00000011072:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.653
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGAAATGATGAAGGAAAAGTGA
R:
TTTCCATTCTCCAGCGTTCTTCC
Band lengths:
262-1346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]