DreINT0177926 @ danRer10
Intron Retention
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40533980-40534329:-
Coord C1 exon
chr5:40534210-40534329
Coord A exon
chr5:40534126-40534209
Coord C2 exon
chr5:40533980-40534125
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGTATATTCCACTGTTGTAGAAA
3' ss Score
7
Exon sequences
Seq C1 exon
GTTAGGAATGATGAAGGCAAGGTTATCCGGTTCCACTGCAAACTGTGTGAATGCAGTTTCAATGATCCCAATGCCAAGGAAATGCATTTGAAAGGAAGGAGACACCGACTGCAGTACAAG
Seq A exon
GTTAGTGAGTCAACAGTTCGGCTTCTGTTTTTCTTATTATGACTATAACTTCAGTGTCGCTGATTGTATATTCCACTGTTGTAG
Seq C2 exon
AAAAAGGTTAACCCAGATCTCCAGGTGGAAGTGAAACCAAGCATCCGTGCCAGGAAAATTCAAGAGGAAAAAATGAGGAAGCAGATGCAAAAGGAAGAATACTGGAGAAGACGCGAAGAAGAGGAGCGCTGGAGGATGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109:ENSDART00000074789:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.735
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAATGCCAAGGAAATGCA
R:
GCTCCTCTTCTTCGCGTCTTC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]