DreINT0177961 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4689295-4691029:-
Coord C1 exon
chr22:4690910-4691029
Coord A exon
chr22:4689441-4690909
Coord C2 exon
chr22:4689295-4689440
Length
1469 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
AGTTTTTTTTTTCCCCCCAGAAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTTCGTAATGATGATGGAAAGGTGATTCGCTTTCATTGTAAACTGTGTGAATGCAGCTTCAACGATCCCAACGCTAAAGACATGCATCTGAAGGGACGCAGACACAGACTGCAATACAAA
Seq A exon
GTAAGACGTCATCAAATCAAAAACAGCGGTCCTTGCATGCAACAACAAAAACACACTACTTGTTGTGTTTTTTATTTGTTGTATTTTATTCAAGCAGTTGTTGTTTTTTTACTAATTTAACTTTTAACTATTGTTAAATGGCTATTTTTAAAAATGTGACCCTGGACCATAAATTCAGTCATAAGGGCCAATTTTTAGAAAATTGAGGTTTATACAGACAAGACAACACGCTTTGTGTTTCTATTTTCTTATCTTATGTAAAACTAGCTAGTTGAAATGTATGTGAAACTTAATTCATTTGAACTAAATTGGTATTTCCTAAGTGCATTTACTTTTGAATAATAAAACATATTTTTGCAAATGAATTTAGTCAATTAAAGTAACAAAAGGGGGTTACTAGCGCATATAAACGTCTCAAGTTCAAGCCCAGACTTATAAACGTTTCTTGATCCTCTCCCCGTCTCTAAGCAGCTTCAATTCCTGTTAATACCTACAGTTTTTTTTTTCATAACAAAAGGCAAAAATCTCTTAATCAGGACATTTTGGTGGAACTGAAAGTGAACTCTTTTTAAATATATTGTAACTAAGGTCTAAAAAATTTCGACTTCAGAACTATTCACTACTGAAATAAAAAAATGCCCAATTACTGCTTACATCTGAGCATGTTCTTAAACACCACTGATTGGCTAATGAGTTTTGACGTTTTTAAAAATTATAGTACTAATAAGGTATATGCCGAGCTAGTGCTGTTCCCATGCTGATACACTTCCGGTGACCTGTTATTGTGAACTTTTTACCATTTTATACGGTTCCTTATACAGCATCGATGTTGTAATGTCATTAAAATACATTCAGTTAAATAAACTTTAGCATTTATTTGGTTGCTCAAGCGTAAAATGAGACAAAAAGCTGTTTACTCGCACGCGCCCGTCAGAATCGGCAGGCTAGCGCAGAAGCTCCATTGAATATACTGGGGTAAAATAAATGCTCATATTATAAAGATATGACAGGGGAAATATAATGTAGTGCAGTGCTTCTTGTACAATCTGAGACCCACTTTAAATCGGATATCACTCAGCTAGTGGAGATCGCTGATTTTTAAAGAAAACAGACCTTAGACGCGCCGGATTTTGCATTGGCATTCAATTCGCTGGAAACGCTTAACCCAGGTTACTGGCAAATTAAAAGTCCTATTAGCATGCTTCGGCATATACCCCATTGCTACTGATGTTGATAATTTTGACATCTCAAATTGGACCTACCTAACCTAATGGACTACAAAAGTGGAAGATATATGATAATAACAATTAATTAAACTAATCAATTTACAAATAAGTAAATAAATACAAATTTAAAGATGTATTTAAATATTTATATATATAACCTTATGAGTAAGTTTACAACAGTTCAAATCAACATTATGAAACGTAAAACCTGCCGCCATTGATCAGTTTTTTTTTTCCCCCCAG
Seq C2 exon
AAAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCGAGCAATCGTGCACGGAAACTTCTGGAGGTCAAGCTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAGGAGGACGAGCAGCGCTGGCACATGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.888
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=61.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGATGATGGAAAGGTGATTCGC
R:
CTCATCTCCATGTGCCAGCG
Band lengths:
262-1731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]