RnoINT0168826 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11341318-11342183:-
Coord C1 exon
chr7:11342064-11342183
Coord A exon
chr7:11341458-11342063
Coord C2 exon
chr7:11341318-11341457
Length
606 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
3' ss Seq
GTCTGGCTTTACCTTTGCAGAAG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTGTGCAGCGAGGAGGGGAAGGTGATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGATAGGAATGCCAGAGACATGCACCTGACGGGACGCCGGCACCGGCTGCAGTACAGG
Seq A exon
GTGTGTCCGACAAGGGACACAAGAGGCCAGCCAGGGCTACGGGGTAGGGGAAGGTGGCTGGTGAGGAGAGGAACAGGAAGAAAGAGGTGAGAAGGGTAGAGAGGGGGTGCATGGATAGGTGAGGGTGTGGGGAGTGTGTATGGAGATAGGTGGGCGGGCAGGCGGACACTTTCGTAGCTTTGCTACTCACTGGAAGGAGTTTCCCATGCTGTCAGGGACCCTGCAGATGCACAAAGTCATGCGCACCCTGGAGCCCCACTTGCTTTGTGCTTGGCTGAGTGACTTTAGTTCCCAGAAGTGGGCTGAACTGGGCATTCATGACCCCGCCTGGTGCTTGGGCCAGCCACACACTGAGGGAACAGGAGTGGCCCACAAGTAACCCAAGCAGTCTTGGTCATGGAAAGCCACCTCTAGAACCTGGGTAGGACATCTTCCCAGAGTGCCCCGTTTTGGCTGCTGTGGGCTGTGTGCAGCCTGCTTCCCCTACCGGCGCCGTGGTGAATCTGTTAAGAACAGCGGTTGTTAGTTGGGACTTCTCTGTGCCCACCGGATGGCCGCCCACCTGTCCTCTCCAGGGTCACCATCTGTCTGGCTTTACCTTTGCAG
Seq C2 exon
AAGAAAGTTGACCCTACACTTCCAGTGGCCACCCGGCCCAGTGGCCCCATGCAGAGGGTGCTGGCCAAGCGGCTGCAGAGGCAGCGGCAGCAGACACAGGCACGGCTGGAGGATGCACAGCGCTGGAACTCTGAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGGAGGGGAAGGTGAT
R:
CTCAGCTCAGAGTTCCAGCG
Band lengths:
254-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]