MmuINT0180118 @ mm10
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81244661-81245544:+
Coord C1 exon
chr10:81244661-81244780
Coord A exon
chr10:81244781-81245404
Coord C2 exon
chr10:81245405-81245544
Length
624 bp
Sequences
Splice sites
5' ss Seq
AGAGTGTGT
5' ss Score
1.04
3' ss Seq
GGCTGGCTTTACCTTTGCAGAAG
3' ss Score
7.53
Exon sequences
Seq C1 exon
GTGTGTAGTGATGAGGGGAAGGTGATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGACCGGAACGCCAGAGACATGCACCTGACTGGACGCCGGCACCGTCTGCAGTACAGA
Seq A exon
GTGTGTCCAGCAGGGGTGCCAGAGGCCGGCCAGGGCTACCAGTGTGGGGGAAGCGGCTGGTGAAGAGAGGAACAGGAAGAAAGGCTTGAGAGGGGATACAGAGGGCTGCATGGATAGGTGGGGAGTGAGGCGTGTGTATAGAGATAGGTGGGTGAGCGGGCAGACATTATTCGTAGCTTTGCTACTCACTGGAAGGAGTTTCCCCCTCTGGTCCTGCCAGAGACCCTGCAGATGCACAAAGCCACCGACACTCAGGAGCCCACCCTGCTTTGTGTTTGGTTGCTGACCCTCCTTACTGGCTGAGTGTTTTGGTGGCTGTCCTTGGGGAACAACACTCATGACCCCGCCTGGTGCTTGGGCCCCTGCACTCTGAATGAACATGAGTGGCCTACAACCTAGACAGTCTTGGTCATGTAAAGCCACCCCCAGAGCCTGGGCAGGACATTTCCCCAAAGTGACCCATTTTGACTGCTGTGGGCTACATGCAGCCTGCTGTCCCCTCAGCCCACTTCTCCCTACTGCCACTGTGGTGGGGCCCATGAATCTGTAAGAACAGCGGGTGTTAATTGGGGCTTCTCTCTGCCCACGAGCTGGCTGCCCATCTGGCTGGCTTTACCTTTGCAG
Seq C2 exon
AAGAAAGTGGATCCTACACTTCCAGTAGCTGCCCGGCCCAGCGGCCCCATTCAGAGGGTGCTGGCCAAGAGGCTACAGAGGCACTGGCAGCAGGTACAGACACAGCTGGAGGATACACGGCGCTGGGACTCTGAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949:ENSMUST00000117798:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=0.957
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGAGGGGAAGGTGATCC
R:
CTTAGCTCAGAGTCCCAGCGC
Band lengths:
254-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types