BtaINT0164455 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21390612-21392042:+
Coord C1 exon
chr7:21390612-21390731
Coord A exon
chr7:21390732-21391902
Coord C2 exon
chr7:21391903-21392042
Length
1171 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
AAGGTCCCTGAACTTTGCAGAAA
3' ss Score
4.96
Exon sequences
Seq C1 exon
GTGTGCAACGAGGAGGGCCGGGTGATCCGCTTCCACTGCAAGCTGTGTGAGTGCAGCTTCAATGACCCCAACGCCAGGGACATGCACGTGCGGGGACGGCGGCACCGGCTGCAGTACAAG
Seq A exon
GTGCGCCCTGACAGGGGCCGGGGGGCATCTGTGCTCTGGACGCCCTGGCCCACGTCTCAGACCGCACCCTGTGCCTCTGTGAGTCTGAGTCCCTGGGCCCTTCAGCACCACGGGCTCAACCAGAGGGGCCCTCAGTTGCCATGACAAGGCCTCCCTGCCTCTGGTTTGCCGGGGCACGCGTGCACACAAGTGTGTTTAGACACACGTGACCCTGAGTGCGTGTGTGCACAGCACAGGCTATGACCCTCATGAGAGACAGTGGCTTCTGGGCATTTTTCTCTTTTAAGCAGCCTGTTGAGATATCACTCACACACCAAGCAGCTGGCGCATGTGAAGTGGCTTTAACTGCATTCACAAATGTGTACATTCAGCCAGCAGCTCCATCTGATTCCGGAACAGTCCATCAGGAGCCCCGGTCCCTATTGTCAGTCATACCCCCACCCCCTCCCCAGCCCTTGACAACAGGAACCCACTCTCTGTGTCTGTGGATCAGCCTGCTCTGCACGTTTCCCGTCAGTGGAATCACACCCTGTGTGTCTCTGTGTTTGCTTCTCTCACTAAGTGTCATGTTCTCAGGGTCTGTCCATGTGGTAGCAAGTGCCAGGGCTTCTCTCCTTTCTGTGGCTGAGCGATGCTCCGTGTGTGGAGGGACCACATCGGGTGTGTTTTGCCACTGAAGCACACTTGTGTTGTTTCCACCGGTGATTAATCCTTAGACAATACCATGCTGTCTGAGTGAGGAAATTAAGTGCTAAAAGTGAAGCCCAGCGAGTGAGTTAACAATTCTATTTACCGTACACATTGGATCTCACACAAATGGTATTTTCTGAATTACTCTGTTTGGGACGAGCATGGTCAGTCCTCTGAGAACAACGTGACCACTGGTGGCAGTTGCCTCAAGGAGTCTTAGCACCTTCCTCCTCTGGCTCCTCCGTTAGACATCCGGATGGTTCGCTCAGTGTCACGTCTGCAGCTCTTTGAGTCAGCCATGGTTTTGTCCTCATGGTTTTCTGCCATGGCCTTTGGGGGACGAGGAGTGTTGAGACTTCGGGACTGAAGCTCACTGTTGTCTAAATCCAGTGGAAGGGTGTTGTCAGACGGGTGTCCCCTGGGCCCTGAGCTCCCCCCTTCCCAGCATTCTCATCTGAATGAAGGTCCCTGAACTTTGCAG
Seq C2 exon
AAAAAAGTGAACCCCGACCTCCCGATCGCAGACAAGCCCAGCACACGGGTGCGCAAGCTCGTGGAGGAGACACTGCGGAGGCAGCGGCAGCTGACCAAGAGGCGGCTGGGGGAGCTGCGGCGTTGGCACAATGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.851
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCAACGAGGAGGGC
R:
CTTGTCTCATTGTGCCAACGC
Band lengths:
260-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]