BtaEX0040959 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000007730 | ZFX

Description

Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]

Coordinates

chrX:126146067-126151816:-

Coord C1 exon

chrX:126151664-126151816

Coord A exon

chrX:126150994-126151134

Coord C2 exon

chrX:126146067-126150148

Length

141 bp

Sequences

Splice sites

3' ss Seq

TTTTTAATGCACATTGTTAGGTA

3' ss Score

4.65

5' ss Seq

CAGGTGAGG

5' ss Score

10.07

Exon sequences

Seq C1 exon

ATGTTGCTGAAATTGCAGATGAAGTTTATATGGAAGTGATTGTAGGAGAGGAGGATGCTGCTGCCGCTGCAGCAGCCGCTGCCGCCCATGAGCAGCAGATGGATGACAACGAAATCAAAACCTTCATGCCGATAGCATGGGCAGCAGCTTACG

Seq A exon

GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGGCTTGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG

Seq C2 exon

CAATAATTATTGGCCCTGATGGACATCCCTTGACTGTCTATCCTTGCATGATTTGTGGGAAAAAGTTTAAGTCGAGAGGTTTTTTGAAAAGGCACATGAAAAACCATCCTGAACACCTTACCAAGAAGAAGTACCGCTGTACTGACTGTGATTACACTACCAACAAGAAGATAAGTTTACACAACCACCTGGAGAGCCACAAGCTTACCAGCAAGGCGGAGAAGGCCATTGAATGCGATGAGTGCGGAAAGCATTTCTCTCATGCTGGGGCTTTGTTTACTCATAAAATGGTGCATAAGGAAAAAGGAGCTAACAAAATGCACAAATGTAAATTCTGTGAATACGAGACAGCTGAACAAGGGTTACTGAATCGCCACCTTTTGGCGGTCCATAGCAAGAACTTTCCTCATATATGCGTGGAGTGTGGTAAAGGTTTTCGTCATCCATCAGAGCTCAAAAAGCACATGCGAATCCATACTGGCGAGAAGCCGTACCAGTGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000007730_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.254 A=0.667 C2=0.142

Domain overlap (PFAM):

C1:

PF047048=Zfx_Zfy_act=FE(15.2=100)

A:

PF047048=Zfx_Zfy_act=PD(13.4=93.8),PF054436=ROS_MUCR=PU(34.7=54.2)

C2:

PF054436=ROS_MUCR=PD(64.0=12.2),PF0009621=zf-C2H2=WD(100=5.8),PF139091=zf-H2C2_5=WD(100=6.1),PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.8)

Main Inclusion Isoform:

ENSBTAP00000010165