RnoEX0101821 @ rn6
Exon Skipping
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63158097-63165274:-
Coord C1 exon
chrX:63165125-63165274
Coord A exon
chrX:63164472-63164612
Coord C2 exon
chrX:63158097-63163724
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATACACATTGTTAGGTA
3' ss Score
4.93
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCCGCAGCTGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCGTGGGCAGCTGCTTACG
Seq A exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
Seq C2 exon
CAATAATTATTGGCCCAGATGGACATCCTCTCACTGTCTACCCTTGCATGATTTGTGGCAAGAAGTTTAAATCGAGAGGTTTCTTAAAAAGACACATGAAAAACCATCCTGAACACCTTGCCAAGAAAAAGTACCGCTGTACTGACTGTGATTACACTACCAACAAGAAGATAAGTTTACACAATCACCTGGAGAGCCACAAGCTAACCAGCAAGGCAGAGAAAGCCATAGAATGCGATGAGTGTGGAAAGCATTTCTCTCATGCTGGGGCTTTGTTTACTCATAAAATGGTGCATAAGGAAAAAGGAGCCAACAAGATGCACAAGTGTAAGTTCTGTGAATATGAAACAGCTGAACAAGGCCTATTGAATCGCCACCTTTTGGCAGTCCACAGCAAGAATTTTCCTCATATTTGTGTAGAGTGTGGCAAAGGTTTCCGTCATCCATCAGAGCTCAAAAAGCACATGCGAATCCATACTGGAGAAAAGCCCTATGAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.639 C2=0.129
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
PF047048=Zfx_Zfy_act=PD(13.4=93.8)
C2:
PF047048=Zfx_Zfy_act=PD(3.0=0.8),PF0009621=zf-C2H2=WD(100=5.8),PF139091=zf-H2C2_5=WD(100=6.1),PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGAGGAGGATGCTGCAG
R:
ACAGCGGTACTTTTTCTTGGCA
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]