DreEX0086449 @ danRer10

Exon Skipping

Gene

ENSDARG00000074453 | zfx

Description

zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]

Coordinates

chr24:16872145-16877034:+

Coord C1 exon

chr24:16872145-16872279

Coord A exon

chr24:16872510-16872659

Coord C2 exon

chr24:16874799-16877034

Length

150 bp

Sequences

Splice sites

3' ss Seq

ATTAATATAATGTCTGTCAGGTG

3' ss Score

5.93

5' ss Seq

CAGGTGCGT

5' ss Score

9.73

Exon sequences

Seq C1 exon

ATGTGGCTAAAATCACAGATGAGGTCTACATGGAAGTGGTGGTTGGGGGTGAAGACCCTGGAAATGTTCAGAGGACACTTGAAAACGCATCACTTAGCAAAGACTTCATGCCTGTGGCTTGGGCAGCTGCTTACG

Seq A exon

GTGGGGAAGAGAGCGAAAGCTGTGAGAACCGGAATGGAGCAGCTAGTGCTCTGCTGCATGTTGATGAATCTGACATGATTGAAAGGCTCAGTCGGCAACGAAACAAGAACAGGGGCAAAAAACGCTCTGAATTTCGGCACATTCAGACAG

Seq C2 exon

CAATCATCATCGGGCCTTACGGCCAGCCTCTTACAGTGTACCCTTGTATGCTCTGCGGCAAGAAATTCAAGTCACGTGGTTTCCTCAAGCGCCACACCAAGAACCACCACCAGGATGTCGTCAACCGAAAGAAATACCAGTGCACAGACTGTGACTTTACCACTAACAAAAAAGTCAGTCTCCACAACCACATGGAGATCCACACTCTCAGTAGTAAAGCCCCATTTGAGTGTGAAGTGTGTGGGAAAGAGTTTCACCAGCAGGCTGCGCTGTTCTCCCATCGTCTGCAGCACCACCACAGAGAAGCCAAGCTTCAGATCTCACCACCAACCACCAAAATGCACAAGTGCAAGTTCTGCGAATACGAGACTGCAGAACAAGGACTCCTCAACCGGCACCTGCTCGCCGTTCACAGCAAGAACTTCCCGCATATTTGCGTAGAGTGTGGGAAAGGTTTTCGGCATCCTTCAGAGCTGAAGAAACACATGAGAACACACACC

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000074453-'12-13,'12-12,14-13

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.261 A=0.471 C2=0.173

Domain overlap (PFAM):

C1:

PF047048=Zfx_Zfy_act=FE(14.2=100)

A:

PF047048=Zfx_Zfy_act=PD(15.2=94.1),PF049598=ARS2=PU(15.9=43.1)

C2:

PF049598=ARS2=PD(83.3=27.9),PF0009621=zf-C2H2=WD(100=5.8),PF139091=zf-H2C2_5=WD(100=5.8),PF139121=zf-C2H2_6=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.6)

Main Inclusion Isoform:

ENSDARP00000099445