GgaEX1003532 @ galGal3

Exon Skipping

Gene

ENSGALG00000016327

Description

NA

Coordinates

chr1:121641933-121647080:-

Coord C1 exon

chr1:121646946-121647080

Coord A exon

chr1:121644493-121644633

Coord C2 exon

chr1:121641933-121643119

Length

141 bp

Sequences

Splice sites

3' ss Seq

TTTTAAACTTGCTTTGTTAGGTA

3' ss Score

7.64

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

ATGTTGCAGAAATAGCCGATGAGGTTTATATGGAAGTGATAGTAGGGGAGGAAGATGCAGCAGTCGCCCATGAACAGCAAATTGATGACAATGAGATTAAAACTTTCATGCCAATAGCATGGGCAGCAGCTTATG

Seq A exon

GTAATAATAACGATGGCATTGAAAGCCGGAATGGCACTGCAAGTGCTCTTTTGCACATAGATGAGTCAGCGGGACTTGGGAGACTGGCAAAGCAAAAACCAAAGAAGAAAAGGAGGCCTGAGTCCAGGCAGTATCAAACAG

Seq C2 exon

CAATAATCATTGGCCCTGATGGTCATCCACTGACAGTCTATCCCTGCATGATTTGTGGAAAGAAATTTAAATCTAGAGGTTTCTTGAAAAGGCACATGAAAAACCATCCGGAGCACCTTCTTACTAAGAAAAAGTACAGATGCACAGACTGCGATTACACTACGAATAAAAAAATAAGTTTACATAACCACTTGGAGAGTCATAAGCTGACCAACAAAACAGAAAAGCTTATTGAGCGTGATGAGTGTGGGAAAAGCTTCTCTCACGCGGGAGCATTATTTGCGCACAAGATGGTGCACAGGGACAAAGGAGTGAATAAAATGCACAAGTGCAAATTCTGCGACTATGAGACAGCAGAGCAAGGATTGCTAAGTCATCACCTTTTAGCTGTCCACAGCAAGAACTTTCCTCATATTTGTGTGGAGTGTGGCAAGGGATTTCGTCATCCGTCGGAGCTGAAGAAGCACATGCGAATCCACACTGGTGAGAAACCATACCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000016327-'8-11,'8-8,11-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.217 A=0.604 C2=0.152

Domain overlap (PFAM):

C1:

PF047048=Zfx_Zfy_act=FE(13.7=100)

A:

PF047048=Zfx_Zfy_act=PD(13.7=93.8),PF054436=ROS_MUCR=PU(41.2=72.9)

C2:

PF0009621=zf-C2H2=WD(100=5.8),PF054436=ROS_MUCR=WD(100=9.9),PF139091=zf-H2C2_5=WD(100=6.1),PF0009621=zf-C2H2=WD(100=5.1),PF139091=zf-H2C2_5=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.8)

Main Inclusion Isoform:

ENSGALP00000026288