BtaEX0040988 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14202486-14207528:+
Coord C1 exon
chr6:14202486-14202670
Coord A exon
chr6:14203458-14203654
Coord C2 exon
chr6:14207389-14207528
Length
197 bp
Sequences
Splice sites
3' ss Seq
CAATATCTTTGTCCCCTCAGGGT
3' ss Score
9.41
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AACATTTAAATATATTGCTATTTGGATTGGCACAAAGGTTGCACAAAGCTCTTTCAAAAGTTGACATATCATTTTACACATCATCAAATGGAGACAAACTGAAAAATGTAGAAAATAATGTGCCATCCTGCCATCATCAGCAGCCTGCAAAACTGGTCATGGTTAAAAAGGAAGGTCCAAATAAG
Seq A exon
GGTCGTCTCTTTTATACCTGTGATGGACCCAAAGCTGACCAATGTAAATTTTTTAAGTGGTTTGAAGAAATGACCCCAGGATATTTAACACAGGAAAAATCTCTACCTAGCATGGTTTTAAGTGATATAAAAAGTATTGGCTTCTACTTAAGAAGTCAAAAGATACCCCTCTATGAGGAATGCCAACTTTTCGTGAG
Seq C2 exon
GAAAGGATTTGATTTTCAAAGAAAACGGTATGGTAAACTAAAGAAGTTTACTACTGTAGATCCTGAATTTTATAATGAACCTAAGAGCAAACTTTATCTTAAACTGAGTCGGAAAGAAAGTTCATCTGCTTACAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PU(44.4=32.3)
A:
PF068397=zf-GRF=PD(51.1=34.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAAAGGTTGCACAAAG
R:
AGATAAAGTTTGCTCTTAGGTTCATT
Band lengths:
257-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development