RnoEX6011492 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231911132-231914873:+
Coord C1 exon
chr2:231911132-231911316
Coord A exon
chr2:231912923-231913119
Coord C2 exon
chr2:231914734-231914873
Length
197 bp
Sequences
Splice sites
3' ss Seq
TATACCCTCTTCCTGCTTAGGGC
3' ss Score
10.1
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AGCATCTGAATATATTGTTGTTTGGATTGGCACAAAGGCTGTACAAAGCACTTTCCAAAGTTGACATATCCTTTTATACATCGTCAAAAGGAGAGATGATGAAAAGTGGAAAAAATAATTCACCATCCTGCCACCATAATCAACCTGCCAAACTTGTCATGGTTAAAAAAGAAGGACCAAATAAG
Seq A exon
GGCCGTCTATTTTACACATGTGATAAGCCAAAAGGTAATCAATGTAAATTTTTCAAATGGCTTGAGGATGTGACTCCAGAACAGTTATCACAGAATGAGTCTCAGCCCAACATGATTTTTAATGATATTAAGAGTATTGGCTCGTATTTAAGAAGTCAGAAGATAGCAGTCTATGAAGAATGCCAGCTTTTGCTGAG
Seq C2 exon
GAAAGGATTTGATTTTCAGAAAAAACAGCATGGTAAACTAAAAAAACTTGCAACTGTAAATCCTGAATTTTACAGTGAAACAAAAAGTAAACTTTATCTTAAGCTGAGTCGGAAGGAGAGCTCTTCGGTTTATAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'21-15,'21-14,22-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PU(44.4=32.3)
A:
PF068397=zf-GRF=PD(51.1=34.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTTTCCAAAGTTGACATATCCT
R:
TCTCCTTCCGACTCAGCTTAAGA
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]