GgaEX6035138 @ galGal4
Exon Skipping
Gene
ENSGALG00000012068 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:56717324-56718947:+
Coord C1 exon
chr4:56717324-56717494
Coord A exon
chr4:56717965-56718155
Coord C2 exon
chr4:56718811-56718947
Length
191 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCCTGCCTTCCTAGGGC
3' ss Score
10.72
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
ATGCTTTTCGAGTTGTCACAAAGATTACACAGCGCTCTTTTGAAAGTGGATATATCATCTTACACTTCACTGGAAGATGAGCAAAGCGAGAGCAAAGAAAGCTGCGTTCCAGTCTGTGATCACATGCGTCCTGCTAAGGTTCTTGTGGTTAAAAAAGAAGGTCAAAACAAG
Seq A exon
GGCCGTCTGTTCTATGCCTGTGATGCCCCAAGAGCTGAGCGGTGCTCATTTTTCAAGTGGATAGAAGAAGTGAATCCTTCACAAATAAAAAAATTCAGACCAAGTGTAGTGCTTCATGATTTAAGAAGTATTGGGGCGTACCTCCGAAATGAAAAGATTTTTGTCTTTGATGGATGCCAGCTTTTTGTGAG
Seq C2 exon
GAAAGGCTATGAAATTGGAACACGGTGTAGCAAACTCAAGAAACTTATGAATGTGCATGCTGAATCTGATGGGGATTCCAAAAGTAAATTGTACCTCAAGCTAAGCAGAAAGGAGCATTATTCCCTCTTTAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PU(44.4=35.1)
A:
PF068397=zf-GRF=PD(51.1=35.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGCTCTTTTGAAAGTGGA
R:
TCCTTTCTGCTTAGCTTGAGGT
Band lengths:
257-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]