BtaEX0040989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14214729-14220007:+
Coord C1 exon
chr6:14214729-14214991
Coord A exon
chr6:14216281-14216440
Coord C2 exon
chr6:14219930-14220007
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTTTAAAATAATTAGGCG
3' ss Score
3.82
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTCTTCATCAACTACAACGAGCAACAAGAGAGTCAATAAGAGAAAGTTTATCCCACCAGCCTTCTCAAATATCAACACAAAATTTGAACTACTCAGTATAGAAGCAACATTGAAGTTGGCTAGTGAGTTAATTCAGGTGCACAAGTTAAACAAGGATCAAGCCGCAGCTCTAATTCAGATAGCTCAAATGATGGCATCACGCCAGAGTGTCGAAGAAGCGAAGGAACTGGCAATTCATACCCTCCCTATCACGATCATACACG
Seq A exon
GCGTTTTCGGAGCAGGAAAGAGTTACTTGCTAGCTGTGGTGATTTTGTTTTTTGTGCAACTATTTGAAAAATGTGAAGCTCTTACAGTTGGAAATGCAAGACCGTGGAAACTTCTGATTTCTTCTTCTACTAATGTAGCTGTTGACAGAGTGCTTCTTGG
Seq C2 exon
GCTTCTTAGTCTTGGATTTGAAAAGTTTGTCAGAGTTGGGAGTGTCAGAAAGATTGCCAAGCCAGTTTTACCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(17.1=44.9)
A:
PF130861=AAA_11=FE(22.6=100)
C2:
PF130861=AAA_11=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACCAGCCTTCTCAAATA
R:
ACACTCCCAACTCTGACAAACT
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development