HsaEX6085863 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112554705-112561538:-
Coord C1 exon
chr4:112560733-112561538
Coord A exon
chr4:112558150-112558309
Coord C2 exon
chr4:112554705-112554782
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTAAAATAATTAGGTG
3' ss Score
5.48
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
AAAATGCTCAACAAAGTGTCAGCATGTAGTAAGTATTCAACAAACGTCAGTTCTCTTCTACCCTCCTCGATATTGGAGTATGTATCCATTTACAGTATATATCCACTTACTGTTTATTTCCATAAAAAACTGTTCTCTGTAATGCTTACAAAGTGATGGCTAAGTTATGAATTATTCTACTCATCTTTTTCAAATGCCCCTTTTTTTAAAATTGTTTATTTGCTTCATTTTTATTAGGTCTTCGCCAACTATAGTTAGTAACAAAAGAGTCAGTAAGAGAAAATTTATCCCACCAGCCTTCACAAATGTCAGTACAAAATTTGAACTACTCAGCCTAGGAGCAACATTGAAGTTAGCTAGTGAGTTGATTCAGGTACACAAGTTAAACAAGGATCAAGCTACAGCTCTAATTCAAATAGCTCAAATGATGGCATCACATGAAAGCATTGAAGAAGTGAAGGAACTGCAAACTCATACCTTCCCTATCACAATCATACATG
Seq A exon
GTGTGTTTGGAGCAGGAAAGAGTTACTTGCTGGCAGTGGTGATTTTGTTCTTTGTACAGCTGTTTGAAAAGAGTGAAGCTCCCACCATTGGAAATGCAAGGCCGTGGAAACTTCTGATTTCTTCTTCTACTAATGTGGCTGTTGACAGAGTACTTCTTGG
Seq C2 exon
GCTTCTCAGTCTTGGATTTGAAAACTTTATCAGAGTTGGGAGTGTTAGGAAGATTGCCAAACCAATTTTACCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX1-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(17.1=44.9)
A:
PF130861=AAA_11=FE(22.6=100)
C2:
PF130861=AAA_11=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTACTCAGCCTAGGAGCA
R:
TGGTTTGGCAATCTTCCTAACACT
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains