RnoEX0101908 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231925614-231932226:+
Coord C1 exon
chr2:231925614-231925876
Coord A exon
chr2:231927321-231927480
Coord C2 exon
chr2:231932149-231932226
Length
160 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTATGGTGTCTTAGGTG
3' ss Score
6.03
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCTCAGTCAGCTACAGTTAGCAGTAAAAATGTCAGTAAAAGAAAATTTATCCCACCAGCCATTACAAGCATTAAAACAAAATTTGAACTCCTCCACTTGGGAGCAACCTTGCAGTTGGCCAGAGAGTTGATTAACGTGCACCGGTTGAACAACGACCAAGCTTCAGCACTAATGCAGATAGCTCAGATGATGGCATCCCGAGGCAGCGATGAAGATGCACTGGAGCCCTTCAGCCATTCCCTGCCTATCACAGTCATTCATG
Seq A exon
GTGTTTTTGGAGCAGGCAAAAGCTACTTGCTGGCTGTGGTGATTCTGTTCTTGGTAGAGCTGTTTGAAAAGTGTGATTCTGAAGCAGTTGGCAGGGCAAGGCCATGGAAACTCCTCATTTCTTCTTCCACTAACGTAGCTGTTGACAGAGTGCTTCTTGG
Seq C2 exon
GCTTCTCAGTCTTGGATTTGAAAAGTTCATCCGAGTCGGGAGTGTTAGGAAGATTGCCAAGCCAGTTTTACCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(17.1=44.9)
A:
PF130861=AAA_11=FE(22.6=100)
C2:
PF130861=AAA_11=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACTCCTCCACTTGGGA
R:
AACTGGCTTGGCAATCTTCCT
Band lengths:
248-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]