BtaEX0040997 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003575 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr23:30188572-30191914:-
Coord C1 exon
chr23:30191773-30191914
Coord A exon
chr23:30190489-30190571
Coord C2 exon
chr23:30188572-30188695
Length
83 bp
Sequences
Splice sites
3' ss Seq
CAAAGTGCTTTCCTTCTCAGTTC
3' ss Score
7.02
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCCTAGGTGGTGGCCAGGAGCAAGAACTGCTCTGTTGCAAGATGGCAGTGTTGACACCCATTCAGAGGCCACAAAATATCCAGTTCCAGCCAGTGAAGGCTCTGCTCAAGCGTGAATCTCTGGGATCCATTCCAGACAGAG
Seq A exon
TTCTCCAGGTTCCAAGGCTTGCCCCTGGGGGGCGCTGCAGAGAAGATGCCGTGATAGCCACCAGGTTCGCCCCAGGGTCCCAG
Seq C2 exon
GGGCCATTTAAAATGGAAGATGTGGCACTGACTGTTTCCCCTGGATGGACACAGCTGGATTCATCTCAGGTGAACTTGTATGGAGATAAAAGGCAAGAGAACCATGGCAGCCTGACCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003575_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.179 C2=0.690
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCTGTTGCAAGATGGC
R:
TGTCCATCCAGGGGAAACAGT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development