RnoEX0101934 @ rn6
Exon Skipping
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45255605-45256627:+
Coord C1 exon
chr17:45255605-45255752
Coord A exon
chr17:45256020-45256084
Coord C2 exon
chr17:45256504-45256627
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGAGCTTCTTTTTGTTGTAGTCA
3' ss Score
4.85
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAAGGCTCAGAAAGTAGCCAGATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCCTGCCCTCAGAAGTTAGAG
Seq A exon
TCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAGGCTCACATCAGAGCTGCAG
Seq C2 exon
GGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCAGCCTGGTTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=0.978 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGAGTCCATGGAGCCT
R:
CTGCCAGAGTTCTCCTGCATT
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]