MmuEX0053876 @ mm9
Exon Skipping
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21485831-21486775:-
Coord C1 exon
chr13:21486628-21486775
Coord A exon
chr13:21486386-21486450
Coord C2 exon
chr13:21485831-21485954
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGAGCTTCTTTTTGTCGTAGTCA
3' ss Score
4.13
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGCTCCAAGGCAGTGCTGTTGACATCAGCTCAGGGCTCAGAAAGTAGCCAGATGGAGCCCGTGGAGCCTCTGCTGAAGCAGGAGTCTTTGGGATCCCTGCCCTCAGAAGTCAGAG
Seq A exon
TCACTCATGTGGGGCACTGTGGAGAAGATGGAGTGACAGCTACTAGGCTCACATCGGAATTACAG
Seq C2 exon
GGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCCCCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAGCCTGGTTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.582 A=0.540 C2=0.544
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=PU(95.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATGACGATGGGCAGGA
R:
AGGACTGGGGCTACATCTTCC
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: