BtaEX0041035 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36412025-36416691:-
Coord C1 exon
chr12:36416575-36416691
Coord A exon
chr12:36414375-36414525
Coord C2 exon
chr12:36412025-36412197
Length
151 bp
Sequences
Splice sites
3' ss Seq
GGTTCCCATTGTGCATTTAGAAC
3' ss Score
5.2
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GCTCTCAGCATGCAGTCGTCTCCCAACGGCCAGTTTGTAGCGCCAAGTGATATTCAATTGAAGTGCAACTATTGCAAAAACTCTTTCTGTTCAAAGCCAGAAATCTTGGAATGGGAG
Seq A exon
AACAAAGTTCATCAATTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGCTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
Seq C2 exon
GCTGCAAACTGTTGTACAAACAGGACTTTGCAAGGCGTTTAGGACTGAGGTGCGTGACTTGCAATTACTGCTCTCAGCTGTGTAAGAAGGGGGCAACAAGGGAGCTGGATGGTGTGGTGAGGGACTTCTGCAGCGAGGAGTGCTGCCGCCGCTTCCAGGACTGGTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403_MULTIEX3-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGCATGCAGTCGTCTC
R:
AGAAGTCCCTCACCACACCAT
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development