RnoEX0102015 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37196007-37202358:+
Coord C1 exon
chr15:37196007-37196123
Coord A exon
chr15:37198128-37198278
Coord C2 exon
chr15:37202182-37202358
Length
151 bp
Sequences
Splice sites
3' ss Seq
GGTTCCCGTTGTGCATTTAGAAC
3' ss Score
5.97
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCACCTAGTGATATTCAGTTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAATGGGAG
Seq A exon
AACAAAGTGCATCAGTTCTGCAGCAGAACTTGCTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGCCAAGAGGAGAAGACTCTGCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
Seq C2 exon
GCTGCAAGCTGTTATACAAACAAGATTTTGCAAGACGATTAGGATTAAGATGTGTTACCTGCAACTATTGTTCTCAATTGTGTAAGAAGGGAGCCACTAAAGAGCTGGATGGAGTTGTCCGAGACTTCTGCAGTGAAGACTGCTGTAAGAAGTTCCAGGAGTGGTACTACAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
PF064679=zf-FCS=PD(34.1=26.4)
C2:
PF064679=zf-FCS=WD(100=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCATCTCCAAATGGCCA
R:
TCACTGCAGAAGTCTCGGACA
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]