GgaEX6006360 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183355264-183367900:-
Coord C1 exon
chr1:183367784-183367900
Coord A exon
chr1:183367056-183367206
Coord C2 exon
chr1:183355264-183355436
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTTTGTAATTCTGTGTTTAGAAT
3' ss Score
7.8
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTCTCAGTGATCAGTCTTCAACAAATGGTCAGTTTGTGTCTCCTGGTGATATTCAGTTGAAATGCAATTATTGCAAGAGTTCTTTTTGTTCAAAGCCAGAAGTGCTAGAATGGGAG
Seq A exon
AATAAAGTGTATCAGTTCTGCAGCAGAGCATGTTCTGATGATTATAAGAAACTGCACTGCATAGTTACGTACTGTGAATACTGTCAAGAGGAGAAAACACTGCATGAGACTGTGAATTTCTCTGGCATCAAAAGACCATTTTGTAGTGAAG
Seq C2 exon
GCTGCAAGCTGCTATATAAACAAGACTTTGCAAGACGGTTAGGACTGAGATGTGTTACTTGTAATTACTGCTCACAGCTGTGCAAAAAGGGAGCAACTAAGGAACTTGATGGTGTAGTGAGAGATTTCTGCAGTGAAGAGTGCTGTAAAAAATTTCAGGACTGGTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'16-25,'16-23,17-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGGTCAGTTTGTGTCTCCT
R:
ACAGCACTCTTCACTGCAGAA
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]